Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n24r
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51540.1 68414.m05801 kelch repeat-containing protein contain...    30   1.1  
At1g24480.1 68414.m03083 hypothetical protein                          29   3.2  
At5g42170.1 68418.m05133 family II extracellular lipase, putativ...    28   4.3  
At4g19090.1 68417.m02814 hypothetical protein contains Pfam doma...    28   4.3  
At2g01050.1 68415.m00010 hypothetical protein                          28   5.7  
At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containi...    27   7.5  
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family...    27   9.9  
At2g37730.1 68415.m04627 fringe-related protein similarity to pr...    27   9.9  
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta...    27   9.9  
At1g54940.1 68414.m06274 glycogenin glucosyltransferase (glycoge...    27   9.9  
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)...    27   9.9  

>At1g51540.1 68414.m05801 kelch repeat-containing protein contains
            Pfam profile PF01344: Kelch motif
          Length = 1036

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -3

Query: 469  HTEVQWKVMKNSI-----TDMKHISTEKTLMVGKSAKE*MTSVVW 350
            H E  WKV+ NSI     T  KH  T+K ++VG+  +  + ++ W
Sbjct: 938  HIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTLKW 982


>At1g24480.1 68414.m03083 hypothetical protein
          Length = 239

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 380 RKGMNDLCGMDLVP-DPKIIKAALH 309
           R G+ND  GMDLVP  P ++K   H
Sbjct: 113 RVGVNDSVGMDLVPYPPLVVKGDFH 137


>At5g42170.1 68418.m05133 family II extracellular lipase, putative
           similar to family II lipase EXL3 [Arabidopsis thaliana]
           GI:15054386; contains InterPro Entry IPR001087 Lipolytic
           enzyme, G-D-S-L family
          Length = 319

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 254 KDKCGNKVNEIYPYIIQEIKPTLTELGIDTPE 159
           K +C  K+NE+      +I PTL  LG + P+
Sbjct: 202 KRRCSEKLNEVARNFNAKISPTLEALGKELPD 233


>At4g19090.1 68417.m02814 hypothetical protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 751

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 147 VAKLLRCVNTQFGESRLDLLNDVWVDFI 230
           +AK L+ V   FGE +  +L+ VW++F+
Sbjct: 687 LAKELQRVEKNFGEDKWKILSKVWLEFL 714


>At2g01050.1 68415.m00010 hypothetical protein
          Length = 515

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 367 MTSVVWISFPTQRLSKLPFMHADESMIMPLQSGL*KPAKTNVET 236
           +T+ VW+     RLS +P+ +    ++M +  GL +P K ++ T
Sbjct: 162 VTTPVWV-----RLSNIPYNYYHRCLLMEIARGLGRPLKVDMNT 200


>At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containing
           protein / CBS domain-containing protein contains CBS and
           PPR domain repeats
          Length = 580

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -2

Query: 371 MNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFIEACKDKCGNKVNEIYPYIIQEIKP 192
           ++++  + L PD       +HAC +  D   A++F    K+    K  E Y   +Q    
Sbjct: 213 LDEMLRLRLEPDRLTYNTLIHACIKCGDLDAAMKFFNDMKE----KAEEYYDDFLQPDVV 268

Query: 191 TLTEL 177
           T T L
Sbjct: 269 TYTTL 273


>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 722

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 487 PYLYGDHTEVQWKVMKNSITDMKHI--STEKTLMVGKSAKE*MTSVVWISFPT 335
           PY Y    +VQWKV +    D + +   +E   ++G  AK    ++ + S+P+
Sbjct: 187 PYPYSRPIKVQWKVFEKLFVDFRDLLDHSEYCDLIG-IAKNKFQTIPYFSYPS 238


>At2g37730.1 68415.m04627 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 532

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -2

Query: 287 YALAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGIDTPEELGYDKPEL 132
           Y LAV  ++   D C ++   +Y    Q+I+  L+E+G+   +ELG+ + ++
Sbjct: 249 YPLAVELVKLL-DGCIDRYASLYGSD-QKIEACLSEIGVPLTKELGFHQVDI 298


>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-1) nearly identical to
           starch branching enzyme class II [Arabidopsis thaliana]
           GI:619939
          Length = 858

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 438 FFITFHWTSV*SPYRYGADLHGR 506
           F   FHWT+  S YR G  + G+
Sbjct: 762 FVFNFHWTNSYSDYRIGCSVPGK 784


>At1g54940.1 68414.m06274 glycogenin glucosyltransferase
           (glycogenin)-related contains similarity to glycogenin-1
           from Mus musculus [SP|Q9R062], Rattus norvegicus
           [SP|O08730], Homo sapiens [SP|P46976]
          Length = 557

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = -2

Query: 458 PVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYAL 279
           P+   E  D   +    R   DGW   KG+ D+  + +  +      A+ +  R  + A+
Sbjct: 130 PLPQPEGSDANVDVIVARVPCDGWSANKGLRDVFRLQV--NLAAANLAVQSGLRTVNQAV 187

Query: 278 AVRFIEACKDKCGNKVNEIYP 216
            V FI +C       ++EI+P
Sbjct: 188 YVVFIGSC-----GPMHEIFP 203


>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
           family protein similar to cytosolic leucyl-tRNA
           synthetase [Candida albicans] GI:9858190; contains Pfam
           profile PF00133: tRNA synthetases class I (I, L, M and
           V)
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 233 VNEIYPYIIQEIKPTLTELGIDTPEELGYDKPE 135
           + E +   +QEIKP +    I+T E + Y +PE
Sbjct: 482 IGEFFGRKVQEIKPIIKTKLIETGEAIIYSEPE 514


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,910
Number of Sequences: 28952
Number of extensions: 274998
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)