Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n24f
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 189 DMKHISTEKTLMVGKSAKE*MTSVVWISFPTQRLSKLPFMHADESMIMP 335
           D + I + K+++   SA   +  + W  F TQRL    +++A ES   P
Sbjct: 258 DSRQIQSRKSVIKMLSAVVILFFICWAPFHTQRLL---YVYAQESDYYP 303


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 188 CYRILHHFPLDLRVISVQI 132
           C   LH++PLD +  +V+I
Sbjct: 161 CMMDLHYYPLDSQNCTVEI 179


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 435 NWVLTHLRSLATISQ 479
           NW+ THL +L  +S+
Sbjct: 813 NWMPTHLNALLDMSE 827


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 349 YRSLQRQMWKQS 384
           Y++L +QMW Q+
Sbjct: 285 YKTLYKQMWSQN 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,038
Number of Sequences: 438
Number of extensions: 3172
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)