Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n23r
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   111   6e-27
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.53 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.8  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  111 bits (267), Expect = 6e-27
 Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 16/249 (6%)
 Frame = -2

Query: 704 RIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRWRIR 525
           RI+GG+ T IN++P +A +  T+        CG  I+++R +L+AAHC   + T +  I 
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGM---ICGATIISKRYVLTAAHCIIDENTTKLAIV 216

Query: 524 VG-----STFANSGGVVHNVNRIIIHPNYNRRTAD----SDLCILRSNSNIAYNNNVRPI 372
           VG     S    +  V+H++N++IIHP Y+    D    +D+ +L++  +I + + V P 
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPA 276

Query: 371 NIAGANY-NLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPINRAITA 195
            +   ++ +      V   GWG TS  G  S  L+   +  + Q  C + Y      I  
Sbjct: 277 CLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYY----GNIMV 332

Query: 194 NMLCSGVLDVGGRDQCQGDSGGPLLHNR------VLVGVCSWGQYCADRRFPGVNVRVSR 33
           N +C+      G+D CQ DSGGP+L         V +G+ SWG  C   ++P  N +V  
Sbjct: 333 NAMCA---YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECG--KYPNGNTKVGS 387

Query: 32  FTSWIQSNS 6
           +  WI S +
Sbjct: 388 YIDWIVSQT 396


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +3

Query: 318  SSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHVMHNT 497
            ++  ++V+T +   T+ IN     VIS  G T     +  SSTS+      NS+ V  + 
Sbjct: 825  TTEQSVVVTNV---TTTINTPTTSVISMSGTTVPITSLPASSTSI------NSITVEKDV 875

Query: 498  PTVGKGGTNTNTP 536
                K    TNTP
Sbjct: 876  INDVKTQITTNTP 888


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 438 SSTSVIVG-MNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGT 575
           SS  V +G  ND++  +   +P+   GG+++ +P++ S    +VS T
Sbjct: 60  SSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPT 106


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 65  DGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 163
           D + S +P  R++ G   G     S PGTGR+H
Sbjct: 374 DLRMSPLPSIRNRSGLVSGS----STPGTGREH 402


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 315 TSSPNNLVITKIVIGTSNINRTNVVVISY 401
           +S+  N ++  +++GT  I  + +++ISY
Sbjct: 2   SSTEANELVMSVIVGTVVIVSSLIILISY 30


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 677  INQYPGIAALLYTWNWNQWWQ 615
            +  Y   AA + TWN  ++W+
Sbjct: 1178 LRPYLRTAAAILTWNEKRFWE 1198


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 530 IRVGSTFANSGGVVHNVNRIIIHPNYN 450
           +R  S   N GGV H  N  + H N++
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHH 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,286
Number of Sequences: 438
Number of extensions: 5429
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)