Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n23f
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 31 0.97
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659... 30 1.3
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 29 2.3
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 29 3.0
01_05_0612 - 23652121-23652400,23653031-23654427 29 3.9
06_03_0739 + 24004629-24005219 28 5.2
05_04_0069 - 17639386-17641380 28 5.2
10_08_0032 - 14288522-14290465 28 6.9
03_02_0892 - 12218803-12218864,12219395-12219740 27 9.1
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 27 9.1
01_06_1564 - 38276207-38276434,38276571-38276707,38277214-382776... 27 9.1
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 620 TRAQHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVI 456
TRA H SG+ST+ G++ + D PD+D L+ + P+ SP + I
Sbjct: 132 TRALHFSGNSTIEGAINWLSEHQED-PDIDEPLLVPANTITEANKPSLSPEEMKI 185
>01_05_0671 -
24164490-24164544,24164920-24165086,24165787-24165941,
24166291-24166458,24167471-24167552
Length = 208
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +2
Query: 23 YAVYHYFVGPW-AC---CCGGCSYQPTKDYWWLHD---QH*PVSRYSC 145
+ +YH+ GPW C C GG Y+ Y L D +H PV SC
Sbjct: 83 HEIYHWVAGPWMKCSSPCDGGVRYRDVACYGNLSDATIKHYPVDDASC 130
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 81 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 197
TNPQ +IGGS + ++ Y + Y +++ W GGN
Sbjct: 251 TNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 81 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 197
TNPQ +IGGS + ++ Y Y +++ W GGN
Sbjct: 254 TNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 276 GSTFANSGGVVHNVNRII--IHPNYNRRTADSD 368
G T A S ++R++ +HPN NR+T DSD
Sbjct: 64 GITVAFSAAAPPAISRLLFALHPNKNRQTTDSD 96
>06_03_0739 + 24004629-24005219
Length = 196
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 225 AAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIH 335
AAH PY + R+ + G +GG + RII H
Sbjct: 160 AAHTPYSECPSRFAVADGEGRVYAGGYAWSPRRIIRH 196
>05_04_0069 - 17639386-17641380
Length = 664
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 213 SILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNV---NRIIIHPNYNRRTADSDLCILR 383
S L AAH +GDA G W + S GV NV N ++ N + R D+ L ++R
Sbjct: 90 SALIAAHASHGDAEGAWGL---LERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVR 146
>10_08_0032 - 14288522-14290465
Length = 647
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 270 RVGSTFANSGGVVH-NVNRIIIHPNYNRRTADSDLCILRSNSNIAY 404
R+G A++ ++ +VN+++IHP R+ + + + +AY
Sbjct: 465 RIGELVASNFSIIGVDVNQVVIHPRLGRKGYEMIIAFMNPEGMLAY 510
>03_02_0892 - 12218803-12218864,12219395-12219740
Length = 135
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 192 GNILNQRSILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADSDL 371
GN+ + R ++AA +A R R R + G+VH+ ++ P Y + D L
Sbjct: 59 GNLADMREAVAAARHQLAEARRRRRARDSGDGGSGAGIVHDYRPAVL-PFYEKWRKDYGL 117
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 190 PQDCHH*FQFHVYNKAAIPGYWLMLVVEPPIILCGLV 80
P+DCH + ++ PG+++ + V+ P +L LV
Sbjct: 108 PEDCHTVIALPLPHQPLFPGFFMAMSVKDPKLLKALV 144
>01_06_1564 -
38276207-38276434,38276571-38276707,38277214-38277621,
38277895-38278256,38278427-38278524,38278727-38278863,
38279346-38279444,38279753-38280053
Length = 589
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -2
Query: 377 DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKD 198
D ++ +S + S H MH T +V + TP+ ++++ T+ GT S K
Sbjct: 276 DTHSVLTKSSPVSYFASLSYHEMHETSSVVGSSMSYLTPSMSAMSLTTIDGTDSLSNGKG 335
Query: 197 V 195
V
Sbjct: 336 V 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,239,176
Number of Sequences: 37544
Number of extensions: 428691
Number of successful extensions: 1233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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