Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n22r
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 29 0.58
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 1.0
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 27 2.3
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 2.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.3
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 27 2.3
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 2.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 3.1
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 26 4.1
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 26 5.4
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 7.2
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 7.2
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 25 7.2
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 25 7.2
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 7.2
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.5
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 9.5
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 9.5
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 29.1 bits (62), Expect = 0.58
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 344 TSISLLIFSTK*LKLSVRELKGPDTLLADATSLPTLTILSVNSPRINSQPCTNRNSLRTK 165
T IS T ++ R ++ P L +TSL L S N+PRI + + NS+ +K
Sbjct: 83 TQISNPTSKTNNVRAKARNIRNPSQRLRPSTSLARL---SNNAPRIPKEASLHENSISSK 139
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.3 bits (60), Expect = 1.0
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 331 KEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEVVKRTLELLKF-DVMLEQMLDIMT 507
++MDVNV I + E ++ + Q SE + + T+ LL +E+++D
Sbjct: 805 RKMDVNVKTDLVIGENIELQRYLQQLTQYSEKFLNKESENTVGLLNAPGENIEELVD--- 861
Query: 508 SLVLNYVKEITEVFYEALLRLRQREAK 588
N + E + +A+LRL+ AK
Sbjct: 862 ----NQLAETAQAIQQAILRLQNIAAK 884
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -3
Query: 228 IGEFPKDKLAALYEQKLAEDEEFRVALENLQSEEWDAVFGALWESEQFKAEVDTLAE 58
+ E K+ L QK + E+R+++ EEWD + + ++E F V L +
Sbjct: 434 LAELTKEVFTDLRTQKY-QMAEYRISIYGRNREEWDKLAAWIIDNELFSPNVRWLIQ 489
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 295 TDSFNHFVENINKEMDV--NVVIFQEIDHSFEFRQVFHLIDQVSE 423
TD+F F+E I E+D ++++ DH E + ++ +V E
Sbjct: 423 TDAFAPFIEQIEDEVDTIDSMILSIHYDHVMEVKPQERMLQRVGE 467
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 606 FMGLIALGFSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLFE 481
F L + S+P+ K++ + F D L+++ + G+D++ FE
Sbjct: 2625 FAALEYIKDSVPRSKRNTGKMFDDSLELVPENLGNDLKVYFE 2666
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -3
Query: 579 SLPQPKKSFVENFRDFLDIIKDEAGHDIEHLFEHYIEFEEFQRSF 445
S+ Q +S + N+RD K G ++ ++ +E+F++ F
Sbjct: 117 SVSQIFQSMIHNYRDLWHSFKGMCGRNVPATAFQFVLYEQFKKKF 161
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 313 FVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVL 429
F E N+ +D + IF+ I+H+F F +F ++ + ++
Sbjct: 1063 FNEINNRRLDNKLNIFERINHNFLFIAIFVIVAGIQVII 1101
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 211 LGEFTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVENINKEMDVN 348
LGE T + S+ VS F L SFN F +N + M +N
Sbjct: 824 LGEVTLILCREDSQTKRNSMVSVNFAKLLLSFNQFEDNSHLRMSIN 869
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 255 DFTSYINDIIGEFPKDKLAALYEQKL 178
D SY+ND++ + +D+ +LY + L
Sbjct: 70 DAQSYLNDVLQDLSEDEFVSLYNKLL 95
>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +1
Query: 481 LEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSDQAHKHNSDFHF 627
LE I TS V +V I FYE+ L L E +S ++ SD HF
Sbjct: 352 LEIYKAIHTSTVNEFVNSIQ--FYESQLSLVLMEIESKFSNIDGSDIHF 398
>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 490 MLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSDQAHKHNSD 618
+ ++T L N K + + +ALLR+++ E K + K+N D
Sbjct: 96 LTSVLTQLQTNLDK-LKDSHQKALLRIQELEKKVSELSKNNKD 137
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 192 YEQKLAEDEEFRVALENLQSEEWDAV 115
+E+ L ED+E + L +L+S WD +
Sbjct: 91 FEKCLKEDDEEWIELWDLESRTWDLI 116
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 561 KSFVENFRDFLDIIKDEAGHDIEHLFEHYIEFEEFQRSFDYLTTKDF 421
KSF EN ++ D I +D H+ F+R+ ++ TK +
Sbjct: 522 KSFYENHKNRCDPINYVPMNDASHVMTCTKAMNNFKRNATFMRTKSY 568
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 7.2
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = -3
Query: 210 DKLAALYEQKLAEDEEFRVALENLQSEEW-----DAVFGALW--ESEQFKAEV-DTLAEH 55
D+LA L ++ ED+EF N + +EW A FG+++ ++ AEV D E
Sbjct: 52 DELAELEDE---EDDEFLQMYRNKRMQEWKDQMSKAKFGSVYPISKPEYTAEVTDASKEV 108
Query: 54 GIDVHVLMKEL 22
+ VH+ L
Sbjct: 109 FVVVHMFQDSL 119
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -3
Query: 537 DFLDIIKDEAGHDIEHLFEHYIEFEEFQRSFDYLTTKDFRDLIYEMEDLPEFKA 376
D++ + D G HL + +FEE ++F+ L R I +++ K+
Sbjct: 305 DYISLHYDFLGQISSHLSSYKEKFEESSKNFEKLVIMSLRVFILVIQEFCNTKS 358
>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 142
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 145 LKSYSKFFVLSEFLFVQGCEFILGEFTDN 231
+KS+ FF L FL + LGEFTD+
Sbjct: 6 IKSFLLFFFLPFFLSMPMIFATLGEFTDD 34
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 189 EQKLAEDEEFRVALENLQSEEWD 121
E+ L+EDE+F+ E+ +EE+D
Sbjct: 472 EEALSEDEDFQAESESDVAEEYD 494
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 367 IDHSFEFRQVFHLIDQVSEVLRGEVVKRTLELLKFDV 477
+ SFE R+ F+ D + L ++ +EL +FDV
Sbjct: 692 VKESFEQRKFFNAADIMKNFLLNDLSSVYVELTRFDV 728
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,460
Number of Sequences: 5004
Number of extensions: 45190
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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