Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n22r
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 29 4.3
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 29 4.3
SB_36376| Best HMM Match : DUF360 (HMM E-Value=0.53) 28 5.7
SB_30911| Best HMM Match : TT_ORF2 (HMM E-Value=1.1) 28 5.7
SB_42155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1) 28 5.7
SB_33618| Best HMM Match : Guanylate_kin (HMM E-Value=6.3e-13) 28 5.7
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_24814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_17887| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_49861| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_43029| Best HMM Match : Extensin_1 (HMM E-Value=8.9) 28 7.6
>SB_35568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 214 GEFTDNIVNVGSEVASAKSVSG--PFNSLTDSFNHFVENINKEMD 342
GEF NI V + A + V P NSL + +ENIN +D
Sbjct: 507 GEFISNIFLVPKKTADMRPVINLKPLNSLVQKIHFKMENINVALD 551
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = -3
Query: 576 LPQPKKSFVENFRDFLDIIKDEAGHDIEHLFEHY-IEFEEFQRSFDYL---TTKDFRDLI 409
L + K+ V FRD L+ + ++ G ++ L E Y I F + + SF ++ K DL+
Sbjct: 1292 LVKDKEDMVNGFRDRLNTLANDKGQLVDSLKEEYEILFAQKEDSFMHVRDELEKSQEDLL 1351
Query: 408 YEMEDLPEFKAVV 370
+ +L K+ +
Sbjct: 1352 HMQVELDSCKSEI 1364
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 177 AEDEEFRVALENLQSEEWDAVFGALWESEQFKAEVDTLAEHGIDV 43
A+D+EF L+ +EE + + L E QF A+ T A+ + V
Sbjct: 252 ADDKEFNETLDMFDAEEGEYIDLVLMEFNQFLADTITRADLSLQV 296
>SB_36376| Best HMM Match : DUF360 (HMM E-Value=0.53)
Length = 259
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 292 LTDSFNHFVENINKEMDVNVVIFQEID--HSFEFRQVFHLIDQVSEVLRGEVVKRTLELL 465
+ D F+ +E + ++ NV++ +D V L+D V+E L +VV + +L
Sbjct: 25 MLDVFDDVIEGLIIDVGENVIVGLVLDVVDDVIVGLVLDLVDDVNEGLVLDVVDDVIVVL 84
Query: 466 KFDVMLEQMLDIMTSLVLNYVKEITE 543
FD+ + D++ L+L+ V + E
Sbjct: 85 MFDI----VDDVIEGLMLDVVDGVIE 106
>SB_30911| Best HMM Match : TT_ORF2 (HMM E-Value=1.1)
Length = 263
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -3
Query: 387 EFKAVVDFLEXXXXXXXXXXXXXNEMIETIGERVKRARHTLSGRDFTSYINDIIGEFPK 211
E KA ++ E IET+ + A H S +D S I I G+F K
Sbjct: 45 EAKAQEEYTEANRVVKRSIRADKRSYIETLATEAEEAAHQDSTKDLYSIIKKISGKFAK 103
>SB_42155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 292 LTDSFNHFVENINKEMDVNVVIFQEID--HSFEFRQVFHLIDQVSEVLRGEVVKRTLELL 465
+ D F+ +E + ++ NV++ +D V L+D V+E L +VV + +L
Sbjct: 25 MLDVFDDVIEGLIIDVGENVIVGLVLDVVDDVIVGLVLDLVDDVNEGLVLDVVDDVIVVL 84
Query: 466 KFDVMLEQMLDIMTSLVLNYVKEITE 543
FD+ + D++ L+L+ V + E
Sbjct: 85 MFDI----VDDVIEGLMLDVVDGVIE 106
>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
Length = 1936
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -3
Query: 189 EQKLAEDEEFRVALENLQSEEWDAVFGALWESEQFKAEVD 70
++KLAE+EE R LE + EE+DA+ ++ KAEVD
Sbjct: 1170 QRKLAEEEEKR-RLEEMSEEEYDAL------TDDQKAEVD 1202
>SB_33618| Best HMM Match : Guanylate_kin (HMM E-Value=6.3e-13)
Length = 171
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 HLFEHYIEFEEFQRSFDYLTTKDFRDLIYEMEDLPEFKAV 373
H F+H I +F+R+FD + R +I +ED P++ V
Sbjct: 133 HYFDHTITNTDFERTFD-----ELRQVIARLEDEPQWVPV 167
>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -3
Query: 387 EFKAVVDFLEXXXXXXXXXXXXXNEMIETIGERVKRARHTLSGRDFTSYINDIIGEFPK 211
E KA ++ E IET+ + A H S +D S I I G+F K
Sbjct: 492 EAKAQEEYTEANRVVKRSIRADKRSYIETLATEAEEAAHQDSTKDLYSIIKKISGKFAK 550
>SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 444 QTNAGTPQIRCNARTNARYHDQPRP*LCQGNHGSFLRS 557
+T G P I C+ Y D P LC N GS L++
Sbjct: 6 RTRKGVPNIACSTLPYPVYRDWRGPYLCGRNKGSKLKA 43
>SB_24814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = -3
Query: 315 EMIETIGERVK--RARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALEN 142
E ++T+ + ++ R + L+ S + D + ++ A +QKL E EE + LE
Sbjct: 496 EKMQTLQQTMQEEREKDLLNSTHHRSMLEDSLKNTKSEE--ARLKQKLVEAEEEILRLEK 553
Query: 141 LQSEEWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25
SE D + + ++ + E+D++++ + + L K+
Sbjct: 554 NLSEAQDRLSASEMTRDRLEKELDSMSDLSVRLADLEKQ 592
>SB_17887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 276 RHTLSGRDFTSYINDIIGEFPKDKLAAL--YEQKLAEDEEF 160
RH LSG D T+ + ++ F KD +A + E+ +D +F
Sbjct: 60 RHLLSGPDMTNNLLGVLCRFRKDTVALMCDIEKMFFQDNDF 100
>SB_49861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 463 LKFDVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSDQAHKHNSDFHFS 630
LK V+LEQ L +Y KE+ + + L + R + + + + + S+ HF+
Sbjct: 280 LKVVVLLEQGLQACRKRYCDYAKELYKNAADLLSKCRNKSLLTGRTYVYLSEVHFN 335
>SB_43029| Best HMM Match : Extensin_1 (HMM E-Value=8.9)
Length = 199
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 478 MLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSDQAHKHNSDF 621
M++ I SL L++VK+ +VF+E + ++EAKS Q+ +S +
Sbjct: 43 MMKLRRRISQSLRLSFVKDDDDVFHEKDSK-TEKEAKSQQSSPRSSSY 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,215,317
Number of Sequences: 59808
Number of extensions: 319636
Number of successful extensions: 1088
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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