BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11n22r (650 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. 33 1.2 X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for ... 33 1.2 M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipopr... 33 1.2 M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. 33 1.2 M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. 33 1.2 J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipopr... 33 1.2 AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (inclu... 33 1.2 AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. 33 1.2 Y08614-1|CAA69905.2| 1071|Homo sapiens CRM1 protein. 32 1.5 D89729-1|BAA23415.1| 1071|Homo sapiens CRM1 protein protein. 32 1.5 BC032847-1|AAH32847.1| 1071|Homo sapiens XPO1 protein protein. 32 1.5 AC016727-1|AAY14949.1| 1071|Homo sapiens unknown protein. 32 1.5 BC126304-1|AAI26305.1| 664|Homo sapiens cyclic nucleotide gated... 31 3.6 BC126302-1|AAI26303.1| 664|Homo sapiens cyclic nucleotide gated... 31 3.6 S76067-1|AAD14207.1| 261|Homo sapiens CNG2 protein. 30 8.2 D86956-1|BAA13192.2| 949|Homo sapiens KIAA0201 protein. 30 8.2 BC037553-1|AAH37553.1| 858|Homo sapiens heat shock 105kDa/110kD... 30 8.2 AL137142-5|CAI12430.1| 858|Homo sapiens heat shock 105kDa/110kD... 30 8.2 AL137142-4|CAI12428.1| 814|Homo sapiens heat shock 105kDa/110kD... 30 8.2 AL137142-3|CAI12429.1| 817|Homo sapiens heat shock 105kDa/110kD... 30 8.2 AF039695-1|AAC18044.1| 872|Homo sapiens antigen NY-CO-25 protein. 30 8.2 AB003334-1|BAA34780.1| 858|Homo sapiens HSP105 alpha protein. 30 8.2 AB003333-1|BAA34779.1| 814|Homo sapiens HSP105 beta protein. 30 8.2 >X04714-1|CAA28420.1| 4560|Homo sapiens apo-B100 precursor protein. Length = 4560 Score = 32.7 bits (71), Expect = 1.2 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Frame = +1 Query: 301 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 468 SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK Sbjct: 2405 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2464 Query: 469 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 594 V LE + D +L++N+++E A ++ + RE D Sbjct: 2465 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2515 >X04506-1|CAA28191.1| 4563|Homo sapiens protein ( Human mRNA for apolipoprotein B-100. ). Length = 4563 Score = 32.7 bits (71), Expect = 1.2 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Frame = +1 Query: 301 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 468 SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467 Query: 469 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 594 V LE + D +L++N+++E A ++ + RE D Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518 >M19828-1|AAB00481.1| 4563|Homo sapiens protein ( Human apolipoprotein B-100 (apoB) gene, exons 22 through 29. ). Length = 4563 Score = 32.7 bits (71), Expect = 1.2 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Frame = +1 Query: 301 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 468 SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467 Query: 469 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 594 V LE + D +L++N+++E A ++ + RE D Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518 >M15421-1|AAA51758.1| 3262|Homo sapiens APOB protein. Length = 3262 Score = 32.7 bits (71), Expect = 1.2 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Frame = +1 Query: 301 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 468 SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK Sbjct: 1127 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 1186 Query: 469 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 594 V LE + D +L++N+++E A ++ + RE D Sbjct: 1187 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 1237 >M14162-1|AAB04636.1| 4563|Homo sapiens APOB protein. Length = 4563 Score = 32.7 bits (71), Expect = 1.2 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Frame = +1 Query: 301 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 468 SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467 Query: 469 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 594 V LE + D +L++N+++E A ++ + RE D Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518 >J02610-1|AAA35549.1| 4563|Homo sapiens protein ( Human apolipoprotein B-100 mRNA, complete cds. ). Length = 4563 Score = 32.7 bits (71), Expect = 1.2 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Frame = +1 Query: 301 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 468 SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467 Query: 469 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 594 V LE + D +L++N+++E A ++ + RE D Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518 >AY324608-1|AAP72970.1| 4563|Homo sapiens apolipoprotein B (including Ag(x) antigen) protein. Length = 4563 Score = 32.7 bits (71), Expect = 1.2 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Frame = +1 Query: 301 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 468 SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467 Query: 469 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 594 V LE + D +L++N+++E A ++ + RE D Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518 >AC010872-1|AAX88848.1| 3929|Homo sapiens unknown protein. Length = 3929 Score = 32.7 bits (71), Expect = 1.2 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 13/111 (11%) Frame = +1 Query: 301 SFNHFVENINKEMDVNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEV----VKRTLELLK 468 SF F+E++NK +D+ + + D+ + I +V++ L GE+ + + E LK Sbjct: 2408 SFKTFIEDVNKFLDMLIKKLKSFDYHQFVDETNDKIREVTQRLNGEIQALELPQKAEALK 2467 Query: 469 F---------DVMLEQMLDIMTSLVLNYVKEITEVFYEALLRLRQREAKSD 594 V LE + D +L++N+++E A ++ + RE D Sbjct: 2468 LFLEETKATVAVYLESLQDTKITLIINWLQEALSSASLAHMKAKFRETLED 2518 >Y08614-1|CAA69905.2| 1071|Homo sapiens CRM1 protein. Length = 1071 Score = 32.3 bits (70), Expect = 1.5 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = -3 Query: 582 FSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLF 484 FSL Q +F E+ RDFL IK+ AG D LF Sbjct: 1002 FSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLF 1034 >D89729-1|BAA23415.1| 1071|Homo sapiens CRM1 protein protein. Length = 1071 Score = 32.3 bits (70), Expect = 1.5 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = -3 Query: 582 FSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLF 484 FSL Q +F E+ RDFL IK+ AG D LF Sbjct: 1002 FSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLF 1034 >BC032847-1|AAH32847.1| 1071|Homo sapiens XPO1 protein protein. Length = 1071 Score = 32.3 bits (70), Expect = 1.5 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = -3 Query: 582 FSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLF 484 FSL Q +F E+ RDFL IK+ AG D LF Sbjct: 1002 FSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLF 1034 >AC016727-1|AAY14949.1| 1071|Homo sapiens unknown protein. Length = 1071 Score = 32.3 bits (70), Expect = 1.5 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = -3 Query: 582 FSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLF 484 FSL Q +F E+ RDFL IK+ AG D LF Sbjct: 1002 FSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLF 1034 >BC126304-1|AAI26305.1| 664|Homo sapiens cyclic nucleotide gated channel alpha 2 protein. Length = 664 Score = 31.1 bits (67), Expect = 3.6 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 17/125 (13%) Frame = +1 Query: 31 HEDVYVNTVFSKGINFGLELLTLPQSTEHGVPFLALKVLKS-YSKFFVLS---------- 177 H + + SK I FG++ P T+ +LA + + Y L+ Sbjct: 287 HWNACIYYAISKSIGFGVDTWVYPNITDPEYGYLAREYIYCLYWSTLTLTTIGETPPPVK 346 Query: 178 --EFLFVQGCEFILGE--FTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVE--NINKEM 339 E+LFV +F++G F + NVGS +++ + F + D+ H+++ ++K M Sbjct: 347 DEEYLFVI-FDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKGM 405 Query: 340 DVNVV 354 + V+ Sbjct: 406 EAKVI 410 >BC126302-1|AAI26303.1| 664|Homo sapiens cyclic nucleotide gated channel alpha 2 protein. Length = 664 Score = 31.1 bits (67), Expect = 3.6 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 17/125 (13%) Frame = +1 Query: 31 HEDVYVNTVFSKGINFGLELLTLPQSTEHGVPFLALKVLKS-YSKFFVLS---------- 177 H + + SK I FG++ P T+ +LA + + Y L+ Sbjct: 287 HWNACIYYAISKSIGFGVDTWVYPNITDPEYGYLAREYIYCLYWSTLTLTTIGETPPPVK 346 Query: 178 --EFLFVQGCEFILGE--FTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVE--NINKEM 339 E+LFV +F++G F + NVGS +++ + F + D+ H+++ ++K M Sbjct: 347 DEEYLFVI-FDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKGM 405 Query: 340 DVNVV 354 + V+ Sbjct: 406 EAKVI 410 >S76067-1|AAD14207.1| 261|Homo sapiens CNG2 protein. Length = 261 Score = 29.9 bits (64), Expect = 8.2 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Frame = +1 Query: 178 EFLFVQGCEFILGE--FTDNIVNVGSEVASAKSVSGPFNSLTDSFNHFVE--NINKEMDV 345 E+LFV +F++G F + NVGS +++ + F + D+ H+++ ++K M+ Sbjct: 58 EYLFVI-FDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKGMEA 116 Query: 346 NVV 354 V+ Sbjct: 117 KVI 119 >D86956-1|BAA13192.2| 949|Homo sapiens KIAA0201 protein. Length = 949 Score = 29.9 bits (64), Expect = 8.2 Identities = 21/95 (22%), Positives = 43/95 (45%) Frame = -3 Query: 309 IETIGERVKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 130 IET G+ + + + D + + + + EF +DKL YE+ + E + ++E Sbjct: 706 IETEGKMIMQDKLEKERNDAKNAVEEYVYEF-RDKLCGPYEKFICEQDHQNFLRLLTETE 764 Query: 129 EWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25 +W G + + +++ L + G V V +E Sbjct: 765 DWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQE 799 >BC037553-1|AAH37553.1| 858|Homo sapiens heat shock 105kDa/110kDa protein 1 protein. Length = 858 Score = 29.9 bits (64), Expect = 8.2 Identities = 21/95 (22%), Positives = 43/95 (45%) Frame = -3 Query: 309 IETIGERVKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 130 IET G+ + + + D + + + + EF +DKL YE+ + E + ++E Sbjct: 615 IETEGKMIMQDKLEKERNDAKNAVEEYVYEF-RDKLCGPYEKFICEQDHQNFLRLLTETE 673 Query: 129 EWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25 +W G + + +++ L + G V V +E Sbjct: 674 DWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQE 708 >AL137142-5|CAI12430.1| 858|Homo sapiens heat shock 105kDa/110kDa protein 1 protein. Length = 858 Score = 29.9 bits (64), Expect = 8.2 Identities = 21/95 (22%), Positives = 43/95 (45%) Frame = -3 Query: 309 IETIGERVKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 130 IET G+ + + + D + + + + EF +DKL YE+ + E + ++E Sbjct: 615 IETEGKMIMQDKLEKERNDAKNAVEEYVYEF-RDKLCGPYEKFICEQDHQNFLRLLTETE 673 Query: 129 EWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25 +W G + + +++ L + G V V +E Sbjct: 674 DWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQE 708 >AL137142-4|CAI12428.1| 814|Homo sapiens heat shock 105kDa/110kDa protein 1 protein. Length = 814 Score = 29.9 bits (64), Expect = 8.2 Identities = 21/95 (22%), Positives = 43/95 (45%) Frame = -3 Query: 309 IETIGERVKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 130 IET G+ + + + D + + + + EF +DKL YE+ + E + ++E Sbjct: 571 IETEGKMIMQDKLEKERNDAKNAVEEYVYEF-RDKLCGPYEKFICEQDHQNFLRLLTETE 629 Query: 129 EWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25 +W G + + +++ L + G V V +E Sbjct: 630 DWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQE 664 >AL137142-3|CAI12429.1| 817|Homo sapiens heat shock 105kDa/110kDa protein 1 protein. Length = 817 Score = 29.9 bits (64), Expect = 8.2 Identities = 21/95 (22%), Positives = 43/95 (45%) Frame = -3 Query: 309 IETIGERVKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 130 IET G+ + + + D + + + + EF +DKL YE+ + E + ++E Sbjct: 574 IETEGKMIMQDKLEKERNDAKNAVEEYVYEF-RDKLCGPYEKFICEQDHQNFLRLLTETE 632 Query: 129 EWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25 +W G + + +++ L + G V V +E Sbjct: 633 DWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQE 667 >AF039695-1|AAC18044.1| 872|Homo sapiens antigen NY-CO-25 protein. Length = 872 Score = 29.9 bits (64), Expect = 8.2 Identities = 21/95 (22%), Positives = 43/95 (45%) Frame = -3 Query: 309 IETIGERVKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 130 IET G+ + + + D + + + + EF +DKL YE+ + E + ++E Sbjct: 629 IETEGKMIMQDKLEKERNDAKNAVEEYVYEF-RDKLCGPYEKFICEQDHQNFLRLLTETE 687 Query: 129 EWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25 +W G + + +++ L + G V V +E Sbjct: 688 DWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQE 722 >AB003334-1|BAA34780.1| 858|Homo sapiens HSP105 alpha protein. Length = 858 Score = 29.9 bits (64), Expect = 8.2 Identities = 21/95 (22%), Positives = 43/95 (45%) Frame = -3 Query: 309 IETIGERVKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 130 IET G+ + + + D + + + + EF +DKL YE+ + E + ++E Sbjct: 615 IETEGKMIMQDKLEKERNDAKNAVEEYVYEF-RDKLCGPYEKFICEQDHQNFLRLLTETE 673 Query: 129 EWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25 +W G + + +++ L + G V V +E Sbjct: 674 DWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQE 708 >AB003333-1|BAA34779.1| 814|Homo sapiens HSP105 beta protein. Length = 814 Score = 29.9 bits (64), Expect = 8.2 Identities = 21/95 (22%), Positives = 43/95 (45%) Frame = -3 Query: 309 IETIGERVKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSE 130 IET G+ + + + D + + + + EF +DKL YE+ + E + ++E Sbjct: 571 IETEGKMIMQDKLEKERNDAKNAVEEYVYEF-RDKLCGPYEKFICEQDHQNFLRLLTETE 629 Query: 129 EWDAVFGALWESEQFKAEVDTLAEHGIDVHVLMKE 25 +W G + + +++ L + G V V +E Sbjct: 630 DWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQE 664 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 78,496,310 Number of Sequences: 237096 Number of extensions: 1467140 Number of successful extensions: 4833 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4825 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 7253890590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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