Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n22r
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 427 LRGEVVKRTLELLKFDVMLEQMLDIMTSLVLNYVKEITE 543
           L G ++      LKF    + +LD + +L+ NY++ + E
Sbjct: 872 LEGNLMINNKYALKFFPFDKHILDKLPTLISNYIEAVKE 910



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -3

Query: 234  DIIGEFPKDKLAALYEQ---KLAEDEEFRVALE 145
            DI  E P D L ALY Q    L+E +   V+L+
Sbjct: 1338 DISMEVPSDALIALYSQGLFSLSEIDNLDVSLD 1370


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 288 VKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAE---DEEFRVALENLQSEE 127
           V+  + T S  +  + +  II   P DKL+ +   KLA    D  F+V   N+++ E
Sbjct: 260 VRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLHCNMENTE 316


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 234 DIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSEE 127
           D++   P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 234 DIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSEE 127
           D++   P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 234 DIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSEE 127
           D++   P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 1   VLSEDGEEFFHEDVYVNTVFSKGINFGLELLTLPQSTEHGVPFLALKVLKSY 156
           V+SEDG E F          S+   F  E L LP+  + G+P+  L V+  +
Sbjct: 580 VVSEDGSETFKYS-------SQPYGFP-ERLLLPKGKKEGMPYNVLVVVSPF 623


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 1   VLSEDGEEFFHEDVYVNTVFSKGINFGLELLTLPQSTEHGVPFLALKVLKSY 156
           V+SEDG E F          S+   F  E L LP+  + G+P+  L V+  +
Sbjct: 580 VVSEDGSETFKYS-------SQPYGFP-ERLLLPKGKKEGMPYNVLVVVSPF 623


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 43  YVNTVFSKGINFGLELLTLPQSTEHGVPFLALKVLKS 153
           YVN++++ G  F       P     GVP   ++   S
Sbjct: 379 YVNSMYASGAQFATPCTPSPPRGPGGVPTSVIQAATS 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,108
Number of Sequences: 438
Number of extensions: 2981
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)