Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n22f
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0101 - 17283293-17284009                                         29   2.3  
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791...    29   4.0  
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688...    28   5.2  
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143...    28   5.2  
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689...    28   5.2  
01_06_0138 + 26865895-26865953,26866628-26867870                       28   6.9  
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278...    27   9.2  
02_05_0423 - 28834380-28835852,28836987-28837109                       27   9.2  

>03_04_0101 - 17283293-17284009
          Length = 238

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 18  PGKMKVAIVFMGLIALGFSLPQPKKSFVENFRDFLDIIKDEAGHDIEHLFEHY 176
           PG ++ A   MGL+A  ++LP P    +E+ R  L  + D+  HD   LF  Y
Sbjct: 81  PGAIRAA---MGLVASVYALPPPHAGTLEDARLILGKVFDD-HHDATWLFRLY 129


>04_04_0116 +
           22877296-22877482,22877578-22877627,22879057-22879180,
           22879266-22879373,22879462-22880084
          Length = 363

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 351 IGERVKRARHTLSGRDFTSYIND 419
           +G+R+ R R  L G+ + +YIND
Sbjct: 92  VGQRIARGRFVLDGKVYHTYIND 114


>11_06_0014 -
           19267601-19267831,19268338-19268454,19268733-19268890,
           19269501-19269612,19269721-19269908,19270344-19270436,
           19270521-19270708,19271635-19271720,19272662-19272811,
           19273930-19274065,19274143-19274222,19275546-19275626,
           19276114-19276245,19276490-19276610,19277457-19277518,
           19277846-19277974,19278514-19278573,19278689-19278772,
           19278852-19279532
          Length = 962

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 480 DEEFRVALENLQSEEWDAVFGALWESEQFKAEVDTLAEHGID 605
           D + +    N   E +  VF +L ++  F+A++DT  EHG D
Sbjct: 348 DSDAQTEKRNAAQEIFSPVFSSLLDALLFRAQIDT-DEHGTD 388


>06_01_0185 -
           1437693-1437834,1437969-1438078,1438214-1438264,
           1438877-1439122,1439244-1439315,1439614-1439648,
           1439755-1439845,1440546-1440610,1440733-1440813,
           1441020-1441137,1441535-1441627,1441865-1441997,
           1442471-1442503,1443264-1443343,1443444-1443549,
           1443621-1443795,1443884-1443980,1444819-1445251,
           1445329-1445459,1446052-1446341,1446429-1447002
          Length = 1051

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 584 GINFGLELLTLPQSTEHGV-PFLALKVLKSYSKFFVLSEFLFVQG 453
           G + G   L+ PQ  EH + PFLALK+  +  +  +L  +  ++G
Sbjct: 672 GDDCGDSSLSAPQREEHRIGPFLALKIFHTNREILLLKAYSGLKG 716


>05_03_0328 -
           12468142-12468262,12468443-12468641,12468758-12468974,
           12469896-12469994,12470843-12470899,12470943-12472577
          Length = 775

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 399 FTSYINDIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSEEWDAVFGALWESEQFKAEV 578
           F  Y+   I E   D+   LYE+ L   +  +V +   + E    + G   ESE+ K EV
Sbjct: 596 FNEYLQFEIDENEFDRTRELYERLLDRTKHLKVWISYTEFEASAGLAGEDGESEEIKKEV 655


>01_06_0138 + 26865895-26865953,26866628-26867870
          Length = 433

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 532 PCSVLCGRVSNSRPKLI 582
           PCS+ CGR+ N R KL+
Sbjct: 310 PCSLTCGRLLNLREKLV 326


>06_01_0389 +
           2779790-2779891,2780378-2781912,2782087-2782135,
           2782620-2782683,2782755-2782843
          Length = 612

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 370 GPDTLLADATSLPTLTILSVNSP 438
           G D LL+ ATS P LT+L ++ P
Sbjct: 115 GDDALLSLATSCPRLTVLRLSEP 137


>02_05_0423 - 28834380-28835852,28836987-28837109
          Length = 531

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 27  MKVAIVFMGLIALGFSLPQPKKSFVENFR 113
           +KVA+V +G +A+G  L QP   FVE  R
Sbjct: 476 LKVAVVSLGAVAMGLVL-QPALRFVEKKR 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,715
Number of Sequences: 37544
Number of extensions: 258134
Number of successful extensions: 917
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)