Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n22f
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 224 LRGEVVKRTLELLKFDVMLEQMLDIMTSLVLNYVKEITE 108
           L G ++      LKF    + +LD + +L+ NY++ + E
Sbjct: 872 LEGNLMINNKYALKFFPFDKHILDKLPTLISNYIEAVKE 910



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 417  DIIGEFPKDKLAALYEQ---KLAEDEEFRVALE 506
            DI  E P D L ALY Q    L+E +   V+L+
Sbjct: 1338 DISMEVPSDALIALYSQGLFSLSEIDNLDVSLD 1370


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 363 VKRARHTLSGRDFTSYINDIIGEFPKDKLAALYEQKLAE---DEEFRVALENLQSEE 524
           V+  + T S  +  + +  II   P DKL+ +   KLA    D  F+V   N+++ E
Sbjct: 260 VRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLHCNMENTE 316


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 417 DIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSEE 524
           D++   P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 417 DIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSEE 524
           D++   P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 417 DIIGEFPKDKLAALYEQKLAEDEEFRVALENLQSEE 524
           D++   P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 608 YVNTVFSKGINFGLELLTLPQSTEHGVPFLALKVLKS 498
           YVN++++ G  F       P     GVP   ++   S
Sbjct: 379 YVNSMYASGAQFATPCTPSPPRGPGGVPTSVIQAATS 415


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -1

Query: 203 RTLELLKFDVMLEQMLDIMTSLVLNYVKEITEVFYEA 93
           RT+E   +D   E + DI    ++ ++ + + + +EA
Sbjct: 711 RTMEANNYDTAEEAIRDIKIGKLMAFIWDSSRLEFEA 747


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,169
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)