Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n20r
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0575 + 4601904-4602458                                           29   1.9  
04_01_0382 - 5076673-5077774,5078122-5078186                           29   1.9  
02_02_0282 - 8540726-8541106                                           29   1.9  
11_01_0591 - 4694710-4695270                                           29   3.4  
11_01_0587 - 4662277-4662837                                           29   3.4  

>11_01_0575 + 4601904-4602458
          Length = 184

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +3

Query: 276 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 449
           P  R A T  P   +YL   A +   A  + TKL  ++  + + P+ L+    SVD L +
Sbjct: 50  PEARKATTVGPLAELYLRAIANQTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 109

Query: 450 ATSLVDTATIAVNTNNR 500
           A +   +A+  VN   R
Sbjct: 110 ALAAFFSASADVNKKYR 126


>04_01_0382 - 5076673-5077774,5078122-5078186
          Length = 388

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 222 KVKPTPPPVRRTLANCVDPRTRTALTRLP 308
           K  PTPPP RR   N +D R +    RLP
Sbjct: 256 KKLPTPPPKRRLGINMLDGRNKLVEYRLP 284


>02_02_0282 - 8540726-8541106
          Length = 126

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 244 GGGVGFTFVNLQFVNAPRRGFSFTVQ 167
           GGGV  TF+  QFV +   GF   VQ
Sbjct: 12  GGGVKVTFIETQFVTSDAAGFKSLVQ 37


>11_01_0591 - 4694710-4695270
          Length = 186

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 276 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 449
           P  R A T  P   +YL   A     A  + TKL  ++  + + P+ L+    SVD L +
Sbjct: 52  PEARKATTVGPLAELYLQAIANHTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 111

Query: 450 ATSLVDTATIAVNTNNR 500
           A +   +A+  VN   R
Sbjct: 112 ALAAFFSASADVNKKYR 128


>11_01_0587 - 4662277-4662837
          Length = 186

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 276 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 449
           P  R A T  P   +YL   A     A  + TKL  ++  + + P+ L+    SVD L +
Sbjct: 52  PEARKATTVGPLAELYLQAIANHTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 111

Query: 450 ATSLVDTATIAVNTNNR 500
           A +   +A+  VN   R
Sbjct: 112 ALAAFFSASADVNKKYR 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,791
Number of Sequences: 37544
Number of extensions: 226956
Number of successful extensions: 669
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)