Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n20r
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family pr...    31   0.70 
At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family pr...    31   0.70 
At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family pr...    31   0.70 
At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein ...    28   3.7  
At3g08490.1 68416.m00984 hypothetical protein                          27   6.5  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   8.6  

>At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 219

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +3

Query: 339 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 518
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 112 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 171

Query: 519 ETC 527
            TC
Sbjct: 172 VTC 174


>At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 226

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +3

Query: 339 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 518
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 112 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 171

Query: 519 ETC 527
            TC
Sbjct: 172 VTC 174


>At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 247

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +3

Query: 339 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 518
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 111 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 170

Query: 519 ETC 527
            TC
Sbjct: 171 VTC 173


>At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein
           contains Pfam domain PF01363: FYVE zinc finger
          Length = 485

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 532 PVQVSCKMKFALLFVLTAIVAVSTNEVADP--RSTDRSNALSIGSITSSDRLLRSFVVSR 359
           P+Q + K +  L  VLT ++A+ T    +P  +    SN   +GS T+ D  + S V   
Sbjct: 86  PIQGNEKPEVNLKNVLTGLIAIVTGRNKNPLDQKNPSSNVSFLGSGTNGDTFVHSSVYIP 145

Query: 358 AATTNSRAVNVRYT 317
           +A        + Y+
Sbjct: 146 SAPPLLEPSGINYS 159


>At3g08490.1 68416.m00984 hypothetical protein
          Length = 271

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 119 TKFLFFRLHKKFVLPIFLINDSRIY----YEASLSFFFGPVNY 3
           TKFL F    K ++     N S ++    +  S+ FFFGP+N+
Sbjct: 134 TKFLTFNCSTKLIID----NKSNVFGLHIHPPSIKFFFGPLNF 172


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 177 LQYKFGDAKMHILDVYMQRHE 115
           + Y F D KMHILD ++ ++E
Sbjct: 256 VNYCFTDCKMHILDKHVHKYE 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,513
Number of Sequences: 28952
Number of extensions: 179662
Number of successful extensions: 439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)