Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n20f
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family pr...    31   0.72 
At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family pr...    31   0.72 
At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family pr...    31   0.72 
At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein ...    28   3.8  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   8.8  

>At5g57150.3 68418.m08532 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 219

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = -3

Query: 222 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 43
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 112 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 171

Query: 42  ETC 34
            TC
Sbjct: 172 VTC 174


>At5g57150.2 68418.m08533 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 226

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = -3

Query: 222 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 43
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 112 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 171

Query: 42  ETC 34
            TC
Sbjct: 172 VTC 174


>At5g57150.1 68418.m08531 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 247

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = -3

Query: 222 RELVVAARLTTKLRKSLSLEVILPILKALDLSVDLGSATSLVDTATIAVNTNNRANFILQ 43
           REL    + +    K    ++++P+       +D GS+TSL++   + V        ++ 
Sbjct: 111 RELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVS 170

Query: 42  ETC 34
            TC
Sbjct: 171 VTC 173


>At3g43230.1 68416.m04563 zinc finger (FYVE type) family protein
           contains Pfam domain PF01363: FYVE zinc finger
          Length = 485

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 29  PVQVSCKMKFALLFVLTAIVAVSTNEVADP--RSTDRSNALSIGSITSSDRLLRSFVVSR 202
           P+Q + K +  L  VLT ++A+ T    +P  +    SN   +GS T+ D  + S V   
Sbjct: 86  PIQGNEKPEVNLKNVLTGLIAIVTGRNKNPLDQKNPSSNVSFLGSGTNGDTFVHSSVYIP 145

Query: 203 AATTNSRAVNVRYT 244
           +A        + Y+
Sbjct: 146 SAPPLLEPSGINYS 159


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 384 LQYKFGDAKMHILDVYMQRHE 446
           + Y F D KMHILD ++ ++E
Sbjct: 256 VNYCFTDCKMHILDKHVHKYE 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,379,115
Number of Sequences: 28952
Number of extensions: 185737
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)