Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19r
         (770 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4N768 Cluster: Putative uncharacterized protein; n=2; ...    34   3.4  
UniRef50_A5FMU3 Cluster: Putative uncharacterized protein; n=1; ...    34   4.5  
UniRef50_Q8IJE8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  

>UniRef50_Q4N768 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 1094

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 446 VYKLHNKKNLEASTLIPYFCCTIIGSSSENLKMLLHKQTISRLAFSISI--KQFKLFR 279
           +YK HN++NL+  T +   C  ++ S S+  K LL    + R    I+I  K  +LF+
Sbjct: 567 MYKCHNERNLKILTFLNNICSKVVESESDFHKSLLRISYLRRSGKQINILNKMCELFK 624


>UniRef50_A5FMU3 Cluster: Putative uncharacterized protein; n=1;
           Flavobacterium johnsoniae UW101|Rep: Putative
           uncharacterized protein - Flavobacterium johnsoniae
           UW101
          Length = 119

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
 Frame = +2

Query: 353 LSSLKNFQLLC---NKSMVLRLMLLNFFYYGV----YTQIIPKALLIKNGCLETDTVLFI 511
           L  + N   LC   N+ ++L   LLN  Y  +    + +II    LI+  C++T  ++FI
Sbjct: 35  LELIPNHADLCQKINQVLLLAYYLLNIGYCAMTLISWQKIISSTQLIETICIKTAVIIFI 94

Query: 512 IQYLW*FRLL----HYQPFKHNNKN 574
           I  L    +L    + Q   HNNKN
Sbjct: 95  ISILHYLNILIITKYAQKLIHNNKN 119


>UniRef50_Q8IJE8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1309

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +2

Query: 365 KNFQLLCNKSMVLRLMLLNFFYYGVYTQIIPKALLIKNGCLETDTVLFIIQYL-W*FRLL 541
           ++F ++ NK     + +LN+FY+ + + I  K +L  N  L     +F+   + W    L
Sbjct: 314 RHFNIMNNKQA--EIYILNYFYFYIISLIYNKDILTVNFILSIYIDIFVNNLIKWKDIFL 371

Query: 542 HYQPFKHNNKNHYITRLYLIHRALSGSEPYEKGLHFN 652
            ++ F + NK   I + Y+     +  E Y   L  N
Sbjct: 372 FFKTFTNQNKEKCIIQKYINLNNTNFQELYHTELDQN 408


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,990,665
Number of Sequences: 1657284
Number of extensions: 11757617
Number of successful extensions: 22585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22583
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)