Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19r
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   1.7  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.9  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   9.1  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 341  EVTSLSSLKNFQLLCNKSMVLRLMLLNFFYYGVYTQIIPKAL 466
            E  +   +   Q  C K     L  L+ F+Y +Y  ++PK L
Sbjct: 966  EAETKEKMDELQARCEKEQQSLLAELDDFFYWIYVNLLPKPL 1007


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 371 FQLLCNKSMVLRLMLLNFFYYGV 439
           F+LLC + +++ L L N F YG+
Sbjct: 306 FKLLCTEPIIMALGLYNGFAYGL 328


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 359 SLKNFQLLCNKSMVLRLMLLNFFYYGVYTQIIPKALL 469
           +LK+F   C + +V  L  L+ FY    T + P  L+
Sbjct: 534 ALKHFCYDCREQLVGHLSQLHMFYLNAKTYLAPDPLM 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,765
Number of Sequences: 5004
Number of extensions: 57154
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)