Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19r
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10405| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2)                29   3.1  
SB_9964| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_26385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.6  

>SB_10405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 401 LRLMLLNFFYYGVYTQII-PKALLIKNGCLETDTVLFIIQYLW*FRLL 541
           L++++L FFY G Y  ++  +++L  N  + +  ++F   YL  FRLL
Sbjct: 321 LQMLILTFFYKGTYQILLFDRSILPVNDLIGSMFIIFQDVYLQMFRLL 368


>SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2)
          Length = 513

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 415 SKFFLLWSLYTNYPKGTIDKK-WLFRNRYGTIHNSIF 522
           +K F  W   T + K   +K+ WLFR  +G + N IF
Sbjct: 82  AKMFHGWDKSTKHRKDEQNKRQWLFRTIFGVLRNRIF 118


>SB_9964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 542 HYQPFKHNNKNHYITRL-YLIHRALS 616
           HYQPF+H++ N    RL Y  +RALS
Sbjct: 16  HYQPFRHSHDNVITARLHYGSYRALS 41


>SB_26385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 506 IVPYLFLNNHFLSIVPLG*FVYKLHNKKNLEASTLIPYFCCTII 375
           +V   F N H L  + +G F++ LH++ +L     I  FC T++
Sbjct: 5   VVEMPFANRHVLFALKIGVFIFYLHSQASL---LQIIVFCATLV 45


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 103  FALAVDKFYFFLYCIFIKP*LLCFCILRLFVMN 5
            FAL+V   Y +L C+F+    LC C + +F ++
Sbjct: 1752 FALSVSLHYLYL-CVFVFLPYLCLCAIFVFALS 1783


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,755,706
Number of Sequences: 59808
Number of extensions: 350919
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)