Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19r
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic nucleoti...    28   8.5  

>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 371 FQLLCNKSMVLRLMLLNFFYYGVYTQIIPKALLIKNGCLETDT 499
           FQ+ C    +L+  +  F Y+  YTQI+PK+  IKN  +E  T
Sbjct: 153 FQITCESDNLLKSEI--FKYH--YTQIVPKSSNIKNKVIEQST 191


>Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +1

Query: 388 QKYGIKVDASKFFLLWSLYTNYPKGTIDKKWLFRNRYGTIHNSIFMVISFTSLS 549
           +K G+K++ +     W +YT   + T+D+K L       +   + + + +T+LS
Sbjct: 481 KKLGLKMETTNRVRDWFIYTWQQQKTLDEKKLIEKLPLKLQTDLALSVHYTTLS 534


>Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +1

Query: 388 QKYGIKVDASKFFLLWSLYTNYPKGTIDKKWLFRNRYGTIHNSIFMVISFTSLS 549
           +K G+K++ +     W +YT   + T+D+K L       +   + + + +T+LS
Sbjct: 481 KKLGLKMETTNRVRDWFIYTWQQQKTLDEKKLIEKLPLKLQTDLALSVHYTTLS 534


>U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 800

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +1

Query: 388 QKYGIKVDASKFFLLWSLYTNYPKGTIDKKWLFRNRYGTIHNSIFMVISFTSLS 549
           +K G+K++ +     W +YT   + T+D+K L       +   + + + +T+LS
Sbjct: 481 KKLGLKMETTNRVRDWFIYTWQQQKTLDEKKLIEKLPLKLQTDLALSVHYTTLS 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,535,478
Number of Sequences: 27780
Number of extensions: 295539
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)