Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19r
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 87  STAKANYSAIRIYELTYKIERPYL*IQLRN*LPY 188
           ++ KA Y+  R+YELT KI++ +L  +++N + Y
Sbjct: 259 ASIKAGYTIDRLYELT-KIDKWFL-HKMKNIIDY 290


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +2

Query: 401 LRLMLLNFFYYGVYTQIIPKALLIKNGCLETDTVLFI 511
           L ++ +  F  G++  I    ++IKN  ++T T  ++
Sbjct: 43  LTIIYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYL 79


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 542 HYQPFKHNNKNHYITRLY 595
           +Y  + +NN N+Y  +LY
Sbjct: 329 NYNNYNNNNYNNYNKKLY 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,922
Number of Sequences: 438
Number of extensions: 4754
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)