Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   3.7  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   3.7  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    26   4.9  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.9  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   6.5  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   8.6  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   8.6  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 298 VGKTFHVTMCPRGSPEARG 354
           +G+TF     PRGSP  RG
Sbjct: 431 LGRTFDPRFAPRGSPPVRG 449


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 270 RRTDFGRNDRGKNFPRNNVS 329
           RR +  RN+R +NFP N++S
Sbjct: 56  RRMNRRRNERSRNFPSNHLS 75


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
 Frame = +1

Query: 187 SCLRHFQSKPERIPVKLQRWRTA----DHNRDAVRTSVETTVGKTFHVTMCPRGSPEARG 354
           SC+R F   P+ +      W  A    D    ++RTS     G    VT+ P GS  A G
Sbjct: 152 SCVR-FSPNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSLCASG 210

Query: 355 SGYPTFSLW 381
               T  LW
Sbjct: 211 GRDGTLMLW 219


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 456 VPSLLDMPIRRDFGPNMGRFDRG-YEPNRMGNHGNFRRTGNYNRAGERIN 602
           VP  + + I RD   +  R +RG Y  NRM  HG   RT      G R+N
Sbjct: 610 VPEGVRVNIMRD--DSYYRQNRGWYRNNRMEGHGTGMRTNRGRGRGGRMN 657


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -2

Query: 396 RRSLQPEGKGWVTAPPGLRTATGTHCYVESFSHGRFYRSPYGVPVVVCGS 247
           R  L P G G+    PG     G H +   F     +    G P VV G+
Sbjct: 212 RSLLTPTGAGFPAPSPGTANLLGFHTFDSQFPDQYRFTPRDGKPPVVNGT 261


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 23  RQPFAILRRDLYQHSLADFAFVIPTFVVVLFEIFRV*LLFNLVNNSDQ 166
           R P  +LR   Y HS+  +A     F  ++FEI+ +  LF   N +DQ
Sbjct: 199 RAPELLLRSGSYNHSVDLYA-----FGCIVFEIYSLKPLFPGRNETDQ 241


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 300 HGRFYRSPYGVPVVVCGSPSL*FYWNPFGF 211
           HG     P+ VP VV G+  L F W  FGF
Sbjct: 214 HGTTKYRPHNVPHVVLGTVFLWFGW--FGF 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,883
Number of Sequences: 5004
Number of extensions: 58407
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)