Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19f
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0497 - 8891852-8892270,8892368-8892473,8892573-8892911,889...    32   0.41 
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    30   1.6  
12_02_1266 + 27444755-27444760,27445598-27446740                       29   2.2  
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316...    29   2.9  
04_04_0921 - 29431812-29432786                                         29   3.8  
08_02_0829 - 21604845-21605588                                         28   5.0  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   6.6  
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54...    27   8.7  

>03_02_0497 -
           8891852-8892270,8892368-8892473,8892573-8892911,
           8893065-8893415
          Length = 404

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 285 GRNDRGKNFPRNNVSPWQSGGPGERLPN 368
           GR +R ++ P +N+SP QS   G+  PN
Sbjct: 321 GRRERNRSSPTSNLSPRQSSSSGDEAPN 348


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -2

Query: 408 PAWPRRSLQPEGKG--WVTAPPGLRTATGTHCYVESFSH 298
           P WP R L P G    WV  PP    A   H Y+   +H
Sbjct: 305 PVWPPRHLVPRGPAPPWVPPPPPSDPAFWHHPYMRGPAH 343


>12_02_1266 + 27444755-27444760,27445598-27446740
          Length = 382

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 357 APPGLRTATGTHCYVESF 304
           +PPG R  +G HC+V SF
Sbjct: 328 SPPGARACSGNHCFVLSF 345


>03_06_0656 -
           35330109-35331011,35331154-35331360,35331455-35331632,
           35331726-35332221,35332889-35333033
          Length = 642

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 495 GPNMGRFDRGYEPNRMGNHGNFRRTGNYN 581
           G   G ++ GY+P   GN G ++  GNY+
Sbjct: 101 GNGQGHYNGGYQPIHQGN-GQYQNNGNYH 128


>04_04_0921 - 29431812-29432786
          Length = 324

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 426 GGYWQEPAWPRRSLQPEGKGWV 361
           GG W   +WPRR L   G+G V
Sbjct: 171 GGRWLSSSWPRRRLFSAGRGTV 192


>08_02_0829 - 21604845-21605588
          Length = 247

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 596 TLTSAIVISRTPEITMIAHPIRLIPTVKPTHIRPKVPS 483
           T TSA +IS++   TM+  P+ L+P   P +     PS
Sbjct: 198 TTTSAQMISKSQTETMVKAPLALLPFSGPAYFSAPDPS 235


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 302  PTVVSTEVRTASRLWSAVRHLCNFTGIRS 216
            P   STE++   RL SA+ +LCN   +R+
Sbjct: 995  PVYASTELKAGFRLSSALFYLCNILWLRA 1023


>02_01_0077 -
           546033-546223,546314-546566,546635-546865,547165-547331,
           547369-548008
          Length = 493

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 414 QEPAWPRRSLQPEGKGWVTAPP 349
           +EPA PR  + P+  GW + PP
Sbjct: 98  REPAPPRTVVPPQEPGWSSVPP 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,966,792
Number of Sequences: 37544
Number of extensions: 463150
Number of successful extensions: 1260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)