Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n19f
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10345| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 32 0.31
SB_44272| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041) 31 0.96
SB_56408| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_2250| Best HMM Match : MgtE_N (HMM E-Value=8.4) 30 1.3
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 29 2.2
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 29 2.2
SB_57416| Best HMM Match : rve (HMM E-Value=0.0011) 29 2.9
SB_13529| Best HMM Match : RIIa (HMM E-Value=6.5) 29 2.9
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013) 29 2.9
SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5) 29 2.9
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 28 5.1
SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_10345| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 474
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 360 TAPPGLRTAT-GTHCYVESFSHGRFYRSPYGVPVVVCGSPSL*FYWNPFG 214
T PPG T G + ++ES S R + V +VCG L FY+N +G
Sbjct: 131 TGPPGDHTGRQGYYAFIESSSPRRPGDTARLVSPIVCGRVCLRFYYNMYG 180
>SB_44272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 31.1 bits (67), Expect = 0.72
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Frame = +2
Query: 260 TTGTPYGLR*KRPWEK--LST*QCVPVAVRRPGGAVTQPF------PSGWRLRRGHAGSC 415
TT T Y + K+ W K L+ Q V+ G QPF P GW L +G GS
Sbjct: 951 TTSTTYDVIRKK-WAKRCLTVYQEAIVSAFAGAGTAAQPFTGTTGEPEGWALHKGRGGSA 1009
Query: 416 Q*PP 427
PP
Sbjct: 1010 PFPP 1013
>SB_43771| Best HMM Match : AMP-binding (HMM E-Value=0.041)
Length = 339
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 390 SLQPEGKGWVTAPPGLRTATGTHCYVESFSHG 295
+L K W APP R +TG +S+SHG
Sbjct: 9 TLTKGNKSWYRAPPRGRRSTGVEKLTQSYSHG 40
>SB_56408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -3
Query: 422 VTGKSQRGLGGASSQREKVG*PLPRASG 339
V G S RG+GG SSQ G LPR SG
Sbjct: 35 VGGISNRGIGGFSSQPSPSGRRLPRRSG 62
>SB_2250| Best HMM Match : MgtE_N (HMM E-Value=8.4)
Length = 232
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -3
Query: 422 VTGKSQRGLGGASSQREKVG*PLPRASG 339
V G S RG+GG SSQ G LPR SG
Sbjct: 35 VGGISNRGIGGFSSQPSPSGRRLPRRSG 62
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 313 HVTMCPRGSPEARGSGYPTFSLWLE 387
H T+C + SP + SGY TFS+W++
Sbjct: 1332 HHTLCYKNSPPSCPSGY-TFSIWMK 1355
>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 404 RGLGGASSQREKVG*PLPRASGLPRGHI 321
RGLG A+S +E +G P PR G +GH+
Sbjct: 444 RGLGMAASIQELIGCPTPRCDG--KGHV 469
>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 577
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Frame = +2
Query: 260 TTGTPYGLR*KRPWEK--LST*QCVPVAVRRPGGAVTQPF------PSGWRLRRGHAGSC 415
TT T Y + ++ W L+ Q V+ G QPF P GW L +G GS
Sbjct: 412 TTSTTYDVI-RKTWANRCLTVYQEAMVSTFTGAGTAAQPFTGTTGEPEGWALHKGRGGSA 470
Query: 416 Q*PP 427
PP
Sbjct: 471 PFPP 474
>SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 807
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 244 WRTADHNRDAVRTSVETTVGKTFHV 318
W+TA+ NR+A V +V K F+V
Sbjct: 238 WKTAEDNREAFEAEVVDSVAKNFYV 262
>SB_13529| Best HMM Match : RIIa (HMM E-Value=6.5)
Length = 132
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 219 TDSSKITKMANRRPQPGRRTDFGRNDRGKNFPRNNVSPWQSGGPGERLPNLFPL 380
TD + + N P P R T FG + N R +SP++ ER P FPL
Sbjct: 33 TDYNVAAIVHNASPPP-RPTSFGTANFQFNEHRRLLSPYKLPSSNERHPRAFPL 85
>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
Length = 1105
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 219 TDSSKITKMANRRPQPGRRTDFGRNDRGKNFPRNNVSPWQSGGPGERLPNLFPL 380
TD + + N P P R T FG + N R +SP++ ER P FPL
Sbjct: 123 TDYNVAAIVHNASPPP-RPTSFGTANFQFNEHRRLLSPYKLPSSNERHPRAFPL 175
>SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5)
Length = 582
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 509 THIRPKVPSNGHV*ERWDRVLLRLEQIK-EVTGKSQRGLGGASSQREKVG*PLPRASGLP 333
+++RP+ + RW R +RLE I+ + TG S R +++ R PL R G P
Sbjct: 380 SYVRPQRHISSQTLARWLRTSMRLEGIECQFTGHSTRSASTSAAARAVF--PLERKLGTP 437
Query: 332 RGHIVTWKVFPTVVSTEV 279
+ KV P T V
Sbjct: 438 ASFL---KVVPRRPRTAV 452
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 354 PPGLRTATGTHCYVESFSHGRFYRSPYGVPVVVC 253
PP L ATG H + + G R PYG PV C
Sbjct: 532 PPSL-AATGIHDLLRDEALGVIERVPYGEPVTWC 564
>SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 252 RRPQPGRRTDFGRNDRGKNFPRNNVSPWQSGGPGERLPNLFPLAGG 389
+ P+ G+ G+N ++ S W GG G ++ +F L GG
Sbjct: 163 KTPETGKYVIEAFGASGRNGTCSSCSGWTRGGRGAQIKGVFSLQGG 208
>SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = -2
Query: 414 QEPAWPR---RSLQPEGKGWVTAPPGLRT 337
+ P WP L+P GK W + PG R+
Sbjct: 238 RSPPWPEGPVTGLRPSGKSWASFSPGYRS 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,113,561
Number of Sequences: 59808
Number of extensions: 478833
Number of successful extensions: 1224
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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