Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19f
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50071-8|AAV34806.1|  795|Caenorhabditis elegans Uncoordinated p...    29   1.9  
U50071-7|AAV34805.1|  905|Caenorhabditis elegans Uncoordinated p...    29   1.9  
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p...    29   1.9  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   1.9  
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr...    29   1.9  
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr...    29   1.9  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   1.9  
U21732-1|AAA85853.1|  970|Caenorhabditis elegans UNC-44 protein.       29   1.9  
U21731-1|AAA85852.1|  985|Caenorhabditis elegans UNC-44 protein.       29   1.9  
Z69302-7|CAL36505.1|  115|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z22176-5|CAA80134.1|  278|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF047651-9|AAC02720.2|  509|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U42991-1|AAA85197.1|  118|Caenorhabditis elegans RNA binding pro...    28   4.5  
U24124-1|AAA77029.1|  118|Caenorhabditis elegans RRM-type RNA bi...    28   4.5  
AF038614-8|AAB92055.1|  118|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z78410-9|CAB01637.2|  304|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U50071-8|AAV34806.1|  795|Caenorhabditis elegans Uncoordinated
           protein 44, isoform d protein.
          Length = 795

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205 QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
           +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 729 ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 776


>U50071-7|AAV34805.1|  905|Caenorhabditis elegans Uncoordinated
           protein 44, isoform b protein.
          Length = 905

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205 QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
           +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 839 ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 886


>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
            protein 44, isoform c protein.
          Length = 1867

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205  QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
            +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 1743 ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 1790


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205  QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
            +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 1749 ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 1796


>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
            protein.
          Length = 1815

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205  QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
            +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 1749 ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 1796


>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
            protein.
          Length = 1867

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205  QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
            +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 1743 ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 1790


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205  QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
            +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 1749 ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 1796


>U21732-1|AAA85853.1|  970|Caenorhabditis elegans UNC-44 protein.
          Length = 970

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205 QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
           +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 846 ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 893


>U21731-1|AAA85852.1|  985|Caenorhabditis elegans UNC-44 protein.
          Length = 985

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 205  QSKPERIPVKLQRWRTADHNRDAVRTSVETTVGKTFHVTMCPRGSPEAR 351
            +S  E++P  +++   ++ +R+   T V TTV  T H++  P GSP  R
Sbjct: 919  ESTSEQVPEDVEQSVESESHREDDGTIVTTTV-TTSHISESPSGSPTRR 966


>Z69302-7|CAL36505.1|  115|Caenorhabditis elegans Hypothetical
           protein F40F8.12 protein.
          Length = 115

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 153 ITLISDFISYKFLFASFSIKTRTDSSKITKMANRRPQPGRRTD 281
           I L+  FI+Y    +SFS  + T S   +K AN  P P    D
Sbjct: 5   ILLLPFFIAYSVCQSSFSHASSTPSVTTSKYANSSPTPSDAVD 47


>Z22176-5|CAA80134.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK1098.6 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 232 LLESVRVLIENDANKNLYEMKSLIRVID*IK*QLNTKYFEQYHDESRNYKSK 77
           L+E V     +D N+N  EMK +++  D +K +++ K  E  H   + YK K
Sbjct: 72  LMEMVDEKTFDDQNQNSEEMKLILKERDELKKKVDQKSKETVHWTKKYYKLK 123


>AF047651-9|AAC02720.2|  509|Caenorhabditis elegans Hypothetical
           protein C05D2.3 protein.
          Length = 509

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 527 IPTVKPTHIRPKVPSN-GHV*ERWDRVLLRLEQI 429
           IP VKP +I   VPSN     E W++V   LE++
Sbjct: 30  IPDVKPGYIEKSVPSNPPTTPESWEKVFGDLEKV 63


>Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical
           protein T04A11.8 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 65  SLADFAFVIPTFVVVLFEIFRV 130
           S + F ++IPTFV++ F IFR+
Sbjct: 31  SFSPFIYIIPTFVII-FRIFRI 51


>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical
           protein C54D10.7 protein.
          Length = 1144

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +1

Query: 235 LQRWRTADHNRDAVRTSVETTVGKTFHV 318
           L+R++ ++H +D + T+++ T+GK  HV
Sbjct: 499 LRRYKLSEH-QDKLLTNIDVTIGKALHV 525


>U42991-1|AAA85197.1|  118|Caenorhabditis elegans RNA binding
           protein protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 477 PIRRDFGPNMGRFDRGYEPNRMGNHGNFRRTGNY 578
           P R +   N G F RGY  N  GN G + + G Y
Sbjct: 32  PARANANLN-GGFQRGYGGNGYGNRGGYGQQGGY 64


>U24124-1|AAA77029.1|  118|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 477 PIRRDFGPNMGRFDRGYEPNRMGNHGNFRRTGNY 578
           P R +   N G F RGY  N  GN G + + G Y
Sbjct: 32  PARANANLN-GGFQRGYGGNGYGNRGGYGQQGGY 64


>AF038614-8|AAB92055.1|  118|Caenorhabditis elegans Hypothetical
           protein F15E6.3 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 477 PIRRDFGPNMGRFDRGYEPNRMGNHGNFRRTGNY 578
           P R +   N G F RGY  N  GN G + + G Y
Sbjct: 32  PARANANLN-GGFQRGYGGNGYGNRGGYGQQGGY 64


>Z78410-9|CAB01637.2|  304|Caenorhabditis elegans Hypothetical
           protein C51E3.5 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 508 VGLTVGMSLIGWAIMVIS 561
           +G+TVG+ L GWAI  +S
Sbjct: 207 IGVTVGIVLFGWAITTVS 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,135
Number of Sequences: 27780
Number of extensions: 360458
Number of successful extensions: 962
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)