Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.58 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.1  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 495 GPNMGRFDRGYEPNRMG 545
           GP +GR+D G +P  +G
Sbjct: 203 GPRLGRYDNGIDPLPLG 219


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 265 GCGLRFAIFVILLESVRVLIENDANKNLYEMKSLIRVI 152
           GCG  + + +I  +   V+++  + K L    +LIR+I
Sbjct: 136 GCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 173


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 480 WACLGAMGPGSASVG 436
           W C    GPGS+S G
Sbjct: 14  WCCDNLGGPGSSSAG 28


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 265 GCGLRFAIFVILLESVRVLIENDANKNLYEMKSLIRVI 152
           GCG  + + +I  +   V+++  + K L    +LIR+I
Sbjct: 102 GCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 139


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 265 GCGLRFAIFVILLESVRVLIENDANKNLYEMKSLIRVI 152
           GCG  + + +I  +   V+++  + K L    +LIR+I
Sbjct: 12  GCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,612
Number of Sequences: 438
Number of extensions: 5404
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)