Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n19f
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53260.1 68414.m06035 hypothetical protein low similarity to ...    31   0.78 
At3g04900.1 68416.m00532 heavy-metal-associated domain-containin...    29   1.8  
At4g08097.1 68417.m01316 hypothetical protein                          29   2.4  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    28   4.2  
At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2) M...    28   5.5  
At4g01390.1 68417.m00179 meprin and TRAF homology domain-contain...    27   9.6  
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ...    27   9.6  

>At1g53260.1 68414.m06035 hypothetical protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 358

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 27/101 (26%), Positives = 37/101 (36%)
 Frame = +3

Query: 249 NRRPQPGRRTDFGRNDRGKNFPRNNVSPWQSGGPGERLPNLFPLAGGXXXXXXXXXXXXX 428
           NRRP+  R +D GRNDRG         P   G  G   P   P   G             
Sbjct: 167 NRRPRRPRNSDGGRNDRGNQDTGYRRPPPNQGMGGAPPP---PPHIGNNPNMPPHIQPPN 223

Query: 429 XXFQPKQNPVPSLLDMPIRRDFGPNMGRFDRGYEPNRMGNH 551
                +  P P  ++   +    PNM +  +G  P+ MG +
Sbjct: 224 MNQNYRGPPPPPNMNQNYQGPPAPNMNQNYQGPPPSNMGQN 264


>At3g04900.1 68416.m00532 heavy-metal-associated domain-containing
           protein contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 208

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
 Frame = +1

Query: 298 VGKTFHVTMCPRGSPEARGSGY--PTFSLWLEA----PPR--PRWLLPVTS 426
           V  T  V  CP G    RG GY  PT  + + A    PPR  P WL P T+
Sbjct: 108 VTATTPVETCPAGGETFRGFGYPGPTTMMQMPAFSLPPPRGLPGWLAPPTN 158


>At4g08097.1 68417.m01316 hypothetical protein
          Length = 346

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 539 PIRLIPTVKPTHIRPKVP 486
           PI LIPT+K   I+PKVP
Sbjct: 286 PITLIPTIKYNSIQPKVP 303


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
            helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 273  RTDFGRNDRGKNFPRNNVSPWQSGGPGERLPN 368
            R+D   N+ GKN        W+ GG GE + N
Sbjct: 948  RSDGWNNNGGKNEKEECCDGWKDGGSGEEIKN 979


>At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; similar to
           SWISS-PROT:SPP03819 Glutathione-regulated
           potassium-efflux system protein kefC (K(+)/H(+)
           antiporter) [Escherichia coli]
          Length = 627

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +1

Query: 487 GTLGLIWVGLTVGMSLIG--WAIMVISGVR 570
           GTLGL+ VG T+ + +IG  + I +IS VR
Sbjct: 322 GTLGLLLVGKTILVVIIGKLFGISIISAVR 351


>At4g01390.1 68417.m00179 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 291

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 259 HNRDAVRTSVETTVGKTFHVTMCPRGSPEARGSGYPTFSLWLEAP 393
           H  + V +SV    G  + +++ P G   A+G+ Y +  L  +AP
Sbjct: 26  HGIEKVESSVFDLAGHKWKLSVHPNGHTNAKGTHYVSLYLMNQAP 70


>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 309 SFSHGRFYRSPYGVPVVVCGSPSL*FY--WNPF 217
           SF  G + +SPYG P+V+   P +  Y  WNP+
Sbjct: 198 SFLTGSYLQSPYGPPMVL--PPGMVPYSGWNPY 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,696
Number of Sequences: 28952
Number of extensions: 338804
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)