Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n18r
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 349 1e-96
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 345 1e-95
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 345 2e-95
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 79 2e-15
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 79 2e-15
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 51 9e-07
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.32
At2g41230.1 68415.m05091 expressed protein 30 1.3
At4g00450.1 68417.m00062 expressed protein 30 1.7
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 4.0
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 29 4.0
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 29 4.0
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 5.2
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 9.2
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 9.2
At2g22730.1 68415.m02694 transporter-related low similarity to s... 27 9.2
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 27 9.2
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 349 bits (857), Expect = 1e-96
Identities = 153/218 (70%), Positives = 183/218 (83%)
Frame = -2
Query: 704 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 525
SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA V FR P+++ +KELF+
Sbjct: 19 SHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFV 78
Query: 524 APEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVI 345
A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI
Sbjct: 79 AAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVI 138
Query: 344 GHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWP 165
HNP++ TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP LKAG AYHKYK KRNCWP
Sbjct: 139 AHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWP 198
Query: 164 YVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 51
VRGVAMNPVEHPHGGGNHQHIG ASTV+R SAG KV
Sbjct: 199 VVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKV 236
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 345 bits (849), Expect = 1e-95
Identities = 153/218 (70%), Positives = 183/218 (83%)
Frame = -2
Query: 704 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 525
SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P++FK +KELF+
Sbjct: 18 SHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRFKKQKELFV 77
Query: 524 APEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVI 345
A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI
Sbjct: 78 AAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVI 137
Query: 344 GHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWP 165
HNPD+ TR+KLPSG+KK++PS R M+G VAGGGR +KP+LKAG AYHKY+VKRN WP
Sbjct: 138 AHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWP 197
Query: 164 YVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 51
VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KV
Sbjct: 198 KVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKV 235
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 345 bits (848), Expect = 2e-95
Identities = 151/218 (69%), Positives = 182/218 (83%)
Frame = -2
Query: 704 SHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 525
SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA V FR P++FK +KELF+
Sbjct: 18 SHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFV 77
Query: 524 APEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVI 345
A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI
Sbjct: 78 AAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVI 137
Query: 344 GHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWP 165
HNPD +R+KLPSG+KK++PS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP
Sbjct: 138 AHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWP 197
Query: 164 YVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKV 51
VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KV
Sbjct: 198 KVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKV 235
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 79.4 bits (187), Expect = 2e-15
Identities = 45/117 (38%), Positives = 67/117 (57%)
Frame = -2
Query: 464 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 285
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 284 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 114
+ + R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 79.4 bits (187), Expect = 2e-15
Identities = 45/117 (38%), Positives = 67/117 (57%)
Frame = -2
Query: 464 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 285
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 284 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 114
+ + R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 50.8 bits (116), Expect = 9e-07
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -2
Query: 314 VKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM-NP 138
+ LP +KK + S R M+G +A G + K K +KRN W VRGVAM NP
Sbjct: 382 INLPLDSKKTVLSGCRVMIGQIASSG-----LTK------KLMIKRNMWAKVRGVAMMNP 430
Query: 137 VEHPHGG 117
VEHPHGG
Sbjct: 431 VEHPHGG 437
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 405 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 563
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At2g41230.1 68415.m05091 expressed protein
Length = 88
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +1
Query: 115 PPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLLL 276
P P G + + T R+ L L+L L LP F L PPPAT+ +PLLL
Sbjct: 14 PKPMGLNGSSLITARSVALLLFLSLLL-LILPPFLPPLP--PPPATLLLLPLLL 64
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 393 THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 569
TH+L K+ GT++ S + ++ + + C+ + G+ +E P L ++
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208
Query: 570 VYNSQRCTSTRVMDYILNN 626
+ NS + R+ D+ L N
Sbjct: 1209 IINSVGLSVARITDFSLGN 1227
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 218 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 57
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = -2
Query: 458 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP----SGAK 291
+++ G + + ++ +KM RL S I NP K LP +G +
Sbjct: 160 SILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTALPRWVTAGER 219
Query: 290 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 195
++L R V + G + +++A A H
Sbjct: 220 RLLVGRARAHVVVAKDGSGDYRTVMEAVTAAH 251
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +3
Query: 195 VVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRG 371
+V P + F+ F T+TSS N DH + W + R ++ V+N +S+
Sbjct: 49 IVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK- 99
Query: 372 TCQTTSITHF-LFKIAHNGTLRHSSN 446
+ T I++ L + H+GTL S+N
Sbjct: 100 SIGTLKISYANLVLLDHSGTLVWSTN 125
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 246 WRWTY*QTYFESWKGIPQVQG 184
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 190 YLWYALPAFKIGL 228
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 354 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 467
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = +1
Query: 247 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMV 426
ATIP LL G TFL FT L S I + E +P+ LH +
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420
Query: 427 PSGIAPTGITFPTSRVAFF 483
PS + P + T + F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 112 LPPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMP 267
+PPP G M P+ YGQ LP +G+ PP A +P P
Sbjct: 611 VPPPPGSQFSHMQVPQPYGQ-----------LPPLSMGMMQPPPMAEMPPPP 651
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,926,664
Number of Sequences: 28952
Number of extensions: 390849
Number of successful extensions: 1138
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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