Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n18f
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             356   1e-98
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       210   6e-55
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    56   3e-08
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   31   0.84 
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.4  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)         28   5.9  
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)          28   5.9  
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)         28   5.9  
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   5.9  
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)          28   5.9  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  356 bits (875), Expect = 1e-98
 Identities = 161/206 (78%), Positives = 179/206 (86%)
 Frame = +1

Query: 43  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 222
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 223 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 402
           V FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK 
Sbjct: 61  VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120

Query: 403 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 582
           GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIVAGGGRIDKP+L
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPML 180

Query: 583 KAGRAYHKYKVXRNCWPYVRGVCHEP 660
           KAGRAYHKYK  RNCWP VRGV   P
Sbjct: 181 KAGRAYHKYKAKRNCWPRVRGVAMNP 206


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  210 bits (514), Expect = 6e-55
 Identities = 93/123 (75%), Positives = 109/123 (88%)
 Frame = +1

Query: 169 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVM 348
           GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60

Query: 349 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSN 528
           PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KKV+PSSN
Sbjct: 61  PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSN 120

Query: 529 RGM 537
           R +
Sbjct: 121 RAL 123


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
 Frame = +1

Query: 163 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYC--GKK---AT 327
           IK  V  + +DP R A +A+V          +++L IAP+ +  G  +    GK    A 
Sbjct: 56  IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111

Query: 328 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 507
           L+ G+  P+  +P GT+V N+E   G   +LARA+G  A +I    +     V+LPS  +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169

Query: 508 KVLPSSNRGMVGIVAGGGRIDKPILKAGR 594
           K + S     VG V+   R ++ I KAGR
Sbjct: 170 KEVSSKCLASVGRVSNIERKNRVIGKAGR 198


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 557 PPATIPTMPLLLDGRTFLAPDGSFT 483
           P AT   + L+LD  TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159


>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -2

Query: 477 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 304
           T SI ++ + +   + GTC+     +  FK+ H     + H  + H ++N   C +  ++
Sbjct: 76  THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135

Query: 303 KLACVEPFGSNEELLP 256
              CV  F   +++ P
Sbjct: 136 NQRCVS-FNLKKQITP 150


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 418  LARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 546
            +AR +G+F   T +    D  RTR   P   KKVL ++N G + I
Sbjct: 1469 IARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -3

Query: 398  FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SPSGAMKSSFLVLNLYGSRKCTT 219
            F+S L T +P+   P G+TF T +V F    +NW + + SG + +   ++ +  S +   
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121

Query: 218  AKG 210
             +G
Sbjct: 1122 IRG 1124


>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
          Length = 275

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 621 TXDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 496
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
          Length = 321

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 621 TXDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 496
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 181


>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
          Length = 249

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 621 TXDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 496
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 801

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 621 TXDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 496
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 86  TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 123


>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
          Length = 273

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -2

Query: 621 TXDLVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 496
           T DL+L   P    N  VNTST+S  +DH +V    NL  SR
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVIFEVNLKPSR 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,880,416
Number of Sequences: 59808
Number of extensions: 516542
Number of successful extensions: 1289
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)