Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n18f
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 317 4e-87
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 316 6e-87
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 313 6e-86
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 60 1e-09
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 60 1e-09
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ... 32 0.30
At4g00450.1 68417.m00062 expressed protein 30 1.6
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 29 3.6
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ... 29 3.6
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 4.8
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 28 6.4
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 27 8.4
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 8.4
At2g22730.1 68415.m02694 transporter-related low similarity to s... 27 8.4
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 317 bits (779), Expect = 4e-87
Identities = 143/206 (69%), Positives = 171/206 (83%)
Frame = +1
Query: 43 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 222
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 223 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 402
V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120
Query: 403 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 582
GDRG LARASG++A VI HNPD+ TR+KLPSG+KK++PS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180
Query: 583 KAGRAYHKYKVXRNCWPYVRGVCHEP 660
KAG AYHKY+V RN WP VRGV P
Sbjct: 181 KAGNAYHKYRVKRNSWPKVRGVAMNP 206
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 316 bits (777), Expect = 6e-87
Identities = 141/206 (68%), Positives = 170/206 (82%)
Frame = +1
Query: 43 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 222
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 223 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 402
V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +
Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120
Query: 403 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 582
GDRG ARASG++A VI HNPD +R+KLPSG+KK++PS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180
Query: 583 KAGRAYHKYKVXRNCWPYVRGVCHEP 660
KAG AYHKY+V RNCWP VRGV P
Sbjct: 181 KAGNAYHKYRVKRNCWPKVRGVAMNP 206
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 313 bits (769), Expect = 6e-86
Identities = 141/207 (68%), Positives = 170/207 (82%), Gaps = 1/207 (0%)
Frame = +1
Query: 43 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 219
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 220 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 399
V FR P+++ +KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120
Query: 400 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 579
+GDRG LARASG++A VI HNP++ TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPF 180
Query: 580 LKAGRAYHKYKVXRNCWPYVRGVCHEP 660
LKAG AYHKYK RNCWP VRGV P
Sbjct: 181 LKAGNAYHKYKAKRNCWPVVRGVAMNP 207
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 60.1 bits (139), Expect = 1e-09
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = +1
Query: 334 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 513
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 514 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVXRNCWPYVRGVCHEPC 663
+ + R +G V+ K + KAG++ ++ R P VRGV PC
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPC 162
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 60.1 bits (139), Expect = 1e-09
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = +1
Query: 334 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 513
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 514 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVXRNCWPYVRGVCHEPC 663
+ + R +G V+ K + KAG++ ++ R P VRGV PC
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPC 162
>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 393 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 235
FK + T+ H S+RH H+S K S+ K AC P GS+ L C E +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415
>At4g00450.1 68417.m00062 expressed protein
Length = 2124
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -2
Query: 405 THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 229
TH+L K+ GT++ S + ++ + + C+ + G+ +E P L ++
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208
Query: 228 VYNSQRCTSTRVMDYILNN 172
+ NS + R+ D+ L N
Sbjct: 1209 IINSVGLSVARITDFSLGN 1227
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +1
Query: 340 NVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLP----SGAK 507
+++ G + + ++ +KM RL S I NP K LP +G +
Sbjct: 160 SILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKTKSTALPRWVTAGER 219
Query: 508 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 603
++L R V + G + +++A A H
Sbjct: 220 RLLVGRARAHVVVAKDGSGDYRTVMEAVTAAH 251
>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
(S1) identical to S-locus related protein SLR1 homolog
(AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
profiles PF01453: Lectin (probable mannose binding),
PF00954: S-locus glycoprotein family
Length = 439
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = -2
Query: 603 VVCPSS-FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRG 427
+V P + F+ F T+TSS N DH + W + R ++ V+N +S+
Sbjct: 49 IVSPGNIFELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK- 99
Query: 426 TCQTTSITHF-LFKIAHNGTLRHSSN 352
+ T I++ L + H+GTL S+N
Sbjct: 100 SIGTLKISYANLVLLDHSGTLVWSTN 125
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 552 WRWTY*QTYFESWKGIPQVQG 614
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 484 VKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVXRNCWPYVRGV 648
+ LP +KK + S R M+G +A G K ++K RN W VRGV
Sbjct: 382 INLPLDSKKTVLSGCRVMIGQIASSGLTKKLMIK-----------RNMWAKVRGV 425
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 608 YLWYALPAFKIGL 570
Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 444 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 331
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At2g22730.1 68415.m02694 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003974, GI:12003976, GI:12003972,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 510
Score = 27.5 bits (58), Expect = 8.4
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = -3
Query: 551 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMV 372
ATIP LL G TFL FT L S I + E +P+ LH +
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420
Query: 371 PSGIAPTGITFPTSRVAFF 315
PS + P + T + F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,640
Number of Sequences: 28952
Number of extensions: 350646
Number of successful extensions: 952
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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