Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n17f
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.3  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = -2

Query: 396 GVDGSNDDGLRD----NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 229
           G DG + D +      NG L   F D+        G    ++G    HDE+     T GN
Sbjct: 68  GDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN 127

Query: 228 SRSNDNRSGLHGSSHY 181
             +N+  S  + ++++
Sbjct: 128 --NNNTPSATNNNTNF 141


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = -2

Query: 396 GVDGSNDDGLRD----NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 229
           G DG + D +      NG L   F D+        G    ++G    HDE+     T GN
Sbjct: 16  GDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN 75

Query: 228 SRSNDNRSGLHGSSHY 181
             +N+  S  + ++++
Sbjct: 76  --NNNTPSATNNNTNF 89


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = -2

Query: 396 GVDGSNDDGLRD----NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 229
           G DG + D +      NG L   F D+        G    ++G    HDE+     T GN
Sbjct: 199 GDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN 258

Query: 228 SRSNDNRSGLHGSSHY 181
             +N+  S  + ++++
Sbjct: 259 --NNNTPSATNNNTNF 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,582
Number of Sequences: 336
Number of extensions: 962
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)