Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n17f
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   3.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = -2

Query: 408 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 229
           DNR   +  N +   DN    +  +DN   G   +G+ +N +         +KR G   N
Sbjct: 462 DNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQN 521

Query: 228 SRSND 214
              N+
Sbjct: 522 DNQNN 526


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 264 DELHKRRGTGGNSR 223
           D  HKRR TGG  +
Sbjct: 6   DHWHKRRATGGKRK 19


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 40  FLVAFALIAVASARVFEPISVGPALVDTYEPIDTE 144
           FL  F L   A       I   P+L DT EP+D +
Sbjct: 485 FLWVFTLACTAGTLGI--IFQAPSLYDTREPVDQQ 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,304
Number of Sequences: 438
Number of extensions: 1190
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)