Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n16r
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 37 0.018
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26) 31 1.2
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_38556| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.8
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 29 2.8
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.8
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_22574| Best HMM Match : RVP (HMM E-Value=1.4) 29 2.8
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 2.8
SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 29 3.7
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 28 6.5
SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 8.5
SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5) 28 8.5
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 36.7 bits (81), Expect = 0.018
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 202 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNSQD*V 378
DV+D D V +GD G+ + +DV G S G + +++ D S +G + N N D V
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGANDVSNGANDGDDV 224
Query: 379 ESGADVADTTQMQGAEVISLDVSHAAREVNDV 474
+ A+ D GA DVS+ A + +DV
Sbjct: 225 SNVANDGDDVS-NGAN-DGDDVSNGANDCDDV 254
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 30.7 bits (66), Expect = 1.2
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Frame = -1
Query: 441 VKADDFSSLHLRRVSYVGTRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFAS 283
V D ++ ++ R+S TRL N+ + VS + GS++ GE R+ F+R +SF+
Sbjct: 372 VTVDSGATGNMIRLS-TATRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSF 430
Query: 282 GGLALENVVAEATASVSLAD--NIIVSDIGAAITIGD 178
GL +EN+ E A + +I V I +GD
Sbjct: 431 EGLVVENLDVEVLAGTPFMEKNDIAVRPAKGQIILGD 467
>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
Length = 1410
Score = 30.7 bits (66), Expect = 1.2
Identities = 27/112 (24%), Positives = 50/112 (44%)
Frame = +2
Query: 59 RTRLTSAA*SVR*TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARET 238
+T+ +S + ++ +G+ SR + +GP R + R P +A P L A+ T
Sbjct: 243 KTQKSSVSQTMPVSGVHSRPVFDSGPGHRSLK---RFASEGPATMALP--LPDYGDAQTT 297
Query: 239 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT 394
+A+ S S PE+ + + + +A P+D+ + T T PT
Sbjct: 298 NEIAANGETSGPSEPESSNKSSEPDSTPATNAPPSDSPSTTTPTTPQPPTPT 349
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -1
Query: 387 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 229
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 331 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 390
Query: 228 AD--NIIVSDIGAAITIGD 178
+ +I V I +GD
Sbjct: 391 MEKNDIAVRPAKGQIILGD 409
>SB_38556| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 230
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -1
Query: 387 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 229
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 87 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 146
Query: 228 AD--NIIVSDIGAAITIGD 178
+ +I V I +GD
Sbjct: 147 MEKNDIAVRPAKGQIILGD 165
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -1
Query: 387 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 229
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 343 TRLGCNITTSSQSVSQADGSSQLHVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 402
Query: 228 AD--NIIVSDIGAAITIGD 178
+ +I V I +GD
Sbjct: 403 MEKNDIAVRPAKGQIILGD 421
>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -1
Query: 285 SGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQIN 154
SGG L A+A +VSL+D+ S A I++ D++ +LQ++
Sbjct: 665 SGGRTLVQAAADAALAVSLSDH--CSQPSAPISLYDLRDSLQVH 706
>SB_8085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -1
Query: 387 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 229
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 8 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 67
Query: 228 --ADNIIVSDIGAAITIGD 178
++I V I +GD
Sbjct: 68 METNDIAVRPAKGQIILGD 86
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +1
Query: 43 LGDVLQNTADLGCVVRQVDRDLL*EVVDGW-SNFASEEIDLEVRFDIANSYCSSDVTDND 219
L D+L+N + V D D+ ++ G S + E D+ + +S+ + TD D
Sbjct: 654 LADLLKNASARMDDVSSGDNDIPDDLTGGAVSQGSGGEDDI-----LVDSHTPKEFTDTD 708
Query: 220 V-VCEGDGSGSLSNDVLKGKSSGSERPQDAA 309
+ +G+GSGS N + G +GS +++A
Sbjct: 709 AKLLQGEGSGSQHNVMRGGSGAGSGNLKESA 739
>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 577
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -1
Query: 387 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 229
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 342 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 401
Query: 228 AD--NIIVSDIGAAITIGD 178
+ +I V I +GD
Sbjct: 402 MEKNDIAVRPAKGQIILGD 420
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 603 PNSQRILDIVISN--LFNEIGELLRAADPLRRDGY 505
P SQRIL +++ LFN+ L AA+ L R GY
Sbjct: 3158 PGSQRILVVIMGGPQLFNQKRPLSTAAEQLHRHGY 3192
>SB_22574| Best HMM Match : RVP (HMM E-Value=1.4)
Length = 382
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -1
Query: 387 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 229
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 239 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 298
Query: 228 AD--NIIVSDIGAAITIGD 178
+ +I V I +GD
Sbjct: 299 MEKNDIAVRPAKGQIILGD 317
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -1
Query: 387 TRL--NLVLAVPRVSASVGSAE----GEIRI-FSRVLRSFASGGLALENVVAEATASVSL 229
TRL N+ + VS + GS++ GE R+ F+R +SF+ GL +EN+ E A
Sbjct: 352 TRLGCNITTSSQSVSQADGSSQLRVVGETRLSFTRADKSFSFEGLVVENLDVEVLAGTPF 411
Query: 228 AD--NIIVSDIGAAITIGD 178
+ +I V I +GD
Sbjct: 412 MEKNDIAVRPAKGQIILGD 430
>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
Length = 344
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 284 EAKDLRTRLKMRISPSAEPTD-AETLGTARTKLSRVPT*LTRRK----CRELKSSALTSV 448
+A LRT+ K + PS P D A TLGT + R T T+ + + A T
Sbjct: 141 QATTLRTKPKPSV-PSHNPGDQATTLGTNKNPRDRAKTLGTKPQPWGPSHNPQDQAKTLG 199
Query: 449 TRPEKLMMSDAPGGLQEPA*PSR 517
T+P+ S P Q+P+ PS+
Sbjct: 200 TKPQPWGPSHNPRDQQKPSGPSQ 222
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 28.3 bits (60), Expect = 6.5
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 179 SPIVIA-APMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAET 355
+P +A AP++ T+ +A + + +++T S PEAK A+ T ET
Sbjct: 146 APAAVAPAPVTTTIPQAATASPSTQASSTAQEDSKPEAK----------PDEAKSTSTET 195
Query: 356 LGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLM 469
+A T S P T R E SAL + T E L+
Sbjct: 196 AASATTTAS-TPAASTPRSYIEEAESALATGTEYEGLV 232
>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 678 TMKAFIFALALACVSAVPHRDVDFEPNSQRILDIVISNLF 559
T ++ A++ AC A+ H+D D+ P+ I+ +IS +F
Sbjct: 831 TERSVFSAMSTACKQAIFHQDHDYYPSIFIIIIAIISLIF 870
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +2
Query: 230 RETEAVASATTFSRASP--PEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 403
++T++ +S T R P P + D +++L A PT + ++ T +S T ++
Sbjct: 983 QQTKSPSSYPTVIRPKPSLPYSHDFKSKLSSPYHSEARPTSSSSVQTGEKTISSHITGVS 1042
Query: 404 RRKCRELKSSALTSVTRPEKLMMSD 478
+ + ++ ++ T P + D
Sbjct: 1043 TAQITSMSTTTESTTTHPVRRTSRD 1067
>SB_38461| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=6.5)
Length = 207
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 378 NLVLAVPRVSASVG-SAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDI 202
N+ + R +AS G + EIR+ + + GGLAL + AT L ++VS +
Sbjct: 12 NISASRNRHTASFGHGGDKEIRVQYAEIVAAVLGGLALAWIADLATGRRGLGATVLVSGV 71
Query: 201 GAA 193
G A
Sbjct: 72 GLA 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,748
Number of Sequences: 59808
Number of extensions: 409262
Number of successful extensions: 1333
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -