Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n15r
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    27   3.1  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   3.1  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    26   5.5  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 461 DFADN-VNRFEHPKQIIDAG 517
           DF DN ++ FEH KQ +DAG
Sbjct: 684 DFGDNPLDTFEHYKQSVDAG 703


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +1

Query: 250 CRFS*IIFKKTLLISLMTISIYMACFFILVLFEFERVNYINFFRATSLEYIFWAC 414
           C  + +   +  L+ +  ISI + C F LV+F   + N ++      ++ + W C
Sbjct: 95  CSSNKVYSNEVPLLFVFVISISIVCIFDLVIFGCLQYNMVSMDDLHVMQRLSWFC 149


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -1

Query: 76  MIYEREWCNDDVTNYL 29
           ++ +R+W ++D+TNYL
Sbjct: 299 LLQKRKWADEDITNYL 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,326
Number of Sequences: 5004
Number of extensions: 63331
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)