Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n15r
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid...    28   6.3  
At5g23990.1 68418.m02819 ferric-chelate reductase, putative simi...    28   8.3  

>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
           transport family protein weak similarity to SP|P25396
           Tellurite resistance protein tehA. {Escherichia coli};
           contains Pfam profile PF03595: C4-dicarboxylate
           transporter/malic acid transport protein
          Length = 635

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 322 CFFILVLFEFERVNYINFFRATSLEYIFWA 411
           C+FI +   F     INFFR       +WA
Sbjct: 485 CYFIAIFLYFSLAVRINFFRGIKFSLSWWA 514


>At5g23990.1 68418.m02819 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 657

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 493 MFKTIDVVSKICWHIGTVDVRANLHADTPKICILK 389
           +F  +  +SK+ WH  T+   +NL  DT  + I K
Sbjct: 299 LFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRK 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,107
Number of Sequences: 28952
Number of extensions: 284229
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)