Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n15f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    27   2.1  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   4.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.6  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 537 DFADN-VNRFEHPKQIIDAG 481
           DF DN ++ FEH KQ +DAG
Sbjct: 684 DFGDNPLDTFEHYKQSVDAG 703


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 165 FLQLYRRAI*SLKFGINIITKKLRL 239
           +LQ Y+RA+   KFGI + TK L L
Sbjct: 319 YLQQYKRAVCFSKFGIVMDTKGLTL 343


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +3

Query: 195 SLKFGINIITKKLRLFERSELN*SSIKNIRLLIYVNNK*NAQNLIKKINVALPSNLSPLD 374
           SL+  +++ TK L L   ++LN + +K I+  +   N+ N ++ I   +    S+++PL 
Sbjct: 570 SLEASVHLNTKNLEL---ADLNNNLVKQIQHRVPPENQSNLEHTITTSSKNTTSSINPLT 626

Query: 375 IKTS 386
             +S
Sbjct: 627 AVSS 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,137
Number of Sequences: 5004
Number of extensions: 46749
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)