Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n15f
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)        28   5.1  
SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               28   6.7  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)
          Length = 1006

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 428 LKFKKICIVFFLKSVSYYPA-SIICLGCSKRLTLSAK 535
           + F K+ I+  + ++ YYP  +++C  C+K+L ++ K
Sbjct: 165 ITFTKLAIIITI-NIIYYPTFNLMCTNCNKKLDINRK 200


>SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 480

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +2

Query: 374 YKNFIIFFVNERDQ*FY*LKFKKICIVFFLKSVSYYPASIICLGCSKRLTLSAKSVGTLA 553
           YKN ++ F  +R   FY ++F   CIV    S   +      +G  +R++L   +V T+ 
Sbjct: 260 YKNLVVTFTFKRRMGFYFIQFYIPCIVMVTLSWISFWMDRYYIG--ERVSLGITTVLTIV 317

Query: 554 LSMCVPTCTLTRPKY 598
             +     T+ R  Y
Sbjct: 318 FLLGSSNSTMPRVSY 332


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 478 LSSINYLLGMFKTIDVVSKICWHIGTVDVRANLHADTPKIC 600
           L  +NYLL    TI+    +C  I   D    L   TP++C
Sbjct: 613 LPMLNYLLECLTTIEARFPVCGLILLGDFNKTLMQKTPRLC 653


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,094
Number of Sequences: 59808
Number of extensions: 294832
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)