Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n15f
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    28   5.5  
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi...    27   7.3  
At5g22060.1 68418.m02569 DNAJ heat shock protein, putative stron...    27   7.3  
At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containi...    27   9.6  
At1g50460.1 68414.m05656 hexokinase, putative similar to hexokin...    27   9.6  

>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 110 EV*YTISTGEKLLCVLSGIFTTLQESHLKL 199
           EV   +S+ EKL  +L G+ T LQES L L
Sbjct: 751 EVVLLLSSQEKLYVLLVGVSTDLQESSLSL 780


>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 699

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 505 MFKTIDVVSKICWHIGTVDVRANLHADTPKICI 603
           +F  +  +SKI WH  T+   +NL  DT  + I
Sbjct: 341 LFLHVPSISKIQWHPFTITSSSNLEKDTLSVVI 373


>At5g22060.1 68418.m02569 DNAJ heat shock protein, putative strong
           similarity to SP|O60884 DnaJ homolog subfamily A member
           2 (Dnj3) Homo sapiens, several plant DnaJ proteins from
           PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684
           DnaJ central domain (4 repeats), PF01556 DnaJ C terminal
           region
          Length = 419

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 415 LISFINKKNNEVFISRGERLLGKATFIFLIKFCAFYLLLT*INSRMFLIE 266
           ++  I +K +  F  +GE L  + T       C F  +LT ++ R  LI+
Sbjct: 254 IVFVIQQKEHPKFKRKGEDLFVEHTISLTEALCGFQFVLTHLDKRQLLIK 303


>At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 394

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 377 KNFIIFFVN-ERDQ*FY*LKFKKIC-IVFFLKSVSYYPASIICLGCSKR 517
           K  +I  VN ERD  F   KFKK C   +F K+++ Y  ++  L  +K+
Sbjct: 38  KPSLITLVNDERDPKFITEKFKKACQAEWFRKNIAVYERTVRRLAAAKK 86


>At1g50460.1 68414.m05656 hexokinase, putative similar to hexokinase
           1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
          Length = 498

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 590 GVSACKLARTSTVPMCQQILLTT-SIVLNI 504
           G +AC L RT  +  CQ +L T+ S+V+N+
Sbjct: 253 GSNACYLERTDAIIKCQGLLTTSGSMVVNM 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,443,524
Number of Sequences: 28952
Number of extensions: 211795
Number of successful extensions: 364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)