Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n14r
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2S676 Cluster: Putative uncharacterized protein; n=1; ...    34   3.3  
UniRef50_A1AUH9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.3  

>UniRef50_Q2S676 Cluster: Putative uncharacterized protein; n=1;
           Salinibacter ruber DSM 13855|Rep: Putative
           uncharacterized protein - Salinibacter ruber (strain DSM
           13855)
          Length = 542

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 426 LKVGPLGGPSTTLTEEGCSQAWPGLSTTFTPLSDDSQQLLQAPISI 563
           L  GP GG  +T   + C   W  +S   TP   D+ +++  P++I
Sbjct: 385 LVAGPSGGGKSTTIADLCRSGWTHVSDDLTPYDPDTGRVVPLPVTI 430


>UniRef50_A1AUH9 Cluster: Putative uncharacterized protein; n=1;
           Pelobacter propionicus DSM 2379|Rep: Putative
           uncharacterized protein - Pelobacter propionicus (strain
           DSM 2379)
          Length = 117

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 550 ACSSCCESSDNGVNVVDNPGQAWEHPSSVNVVDGPPSGPTF 428
           A  SCC S   G+  +D+P + W++PSS ++       P+F
Sbjct: 51  ALHSCCASEMRGLFSLDSPSRTWKNPSSRSLSGLTSGAPSF 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,954,271
Number of Sequences: 1657284
Number of extensions: 10438740
Number of successful extensions: 24380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24376
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)