Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n14r
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.1  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   4.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 71  ILFQIHLIIGNCYYNFVFI 15
           ILF +HL++  C Y F ++
Sbjct: 246 ILFTVHLLLLVCIYYFYYM 264



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 71  ILFQIHLIIGNCYYNF--VFIVY 9
           I+F +HL+   C Y+F   FI++
Sbjct: 154 IIFTVHLLFLLCIYHFFCAFIIF 176



 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 71  ILFQIHLIIGNCYYNFVFIV 12
           I+F +H ++   Y+ + FI+
Sbjct: 90  IIFTVHFLLCTYYFYYAFII 109



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 71  ILFQIHLIIGNCYYNFV 21
           I+F +HL+   C Y FV
Sbjct: 121 IIFTVHLLFLLCIYYFV 137


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 300 IFRSMIVAETSMINMIYKSKC 362
           IF +++    SM+N +Y SKC
Sbjct: 152 IFVALLEHCFSMLNYVYSSKC 172


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 284 KKNIELXNKDPHRSDVRKQQIRLYCSDSRSSLAAANKIL*IYP 156
           KK I + +K   RSD +   I + C D    +  A  +L  +P
Sbjct: 214 KKLIVVKDKKKSRSDEQTIDICMRCHDQLCDMCGAINMLFGFP 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,235
Number of Sequences: 336
Number of extensions: 2822
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)