Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n14r
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    28   0.98 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   3.0  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   9.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.1  

>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 426 LKVGPLGGPSTTLTEEGCSQAWPGLSTTFTPLSDDSQQLLQA 551
           ++  P G    T  +EG    W   +T  T L+DD+++L  A
Sbjct: 73  VRFNPEGNILATAGDEGTIMLWVPTNTPITTLADDAEELALA 114


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 215 YCSDSRSSLAAANKIL*IYPSSCWQLLSNAVISVKLP-LIPKH 90
           + SDSRSS+A  N I    PS    +L N  +  + P L+P+H
Sbjct: 150 FLSDSRSSIATLNAI----PSLDQSVLLNPNLRARTPSLVPEH 188


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 155 MDKFTKSCLQLPMKISNQNNKVVSAVYE 238
           ++KF K CL+  +K+  ++  V    YE
Sbjct: 132 LEKFKKRCLKHGLKLQGESTSVNQGTYE 159


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -1

Query: 293 RVLKKNIELXNKDPHRSDVRKQQIRLYCSDSRSSLAAANKIL*IYPSSCW-QLLSNAVIS 117
           + L +++ + +KD + S     + +   ++S SSL   + IL    SS W QLL     S
Sbjct: 287 KTLSQSVLVLSKDGNASSSGGTENQ--SANSSSSLMEKDAIL---SSSSWSQLLYLRCSS 341

Query: 116 VKLPLIPKHV*HALSILFQIHL 51
            KL  IPK+V  +L  L  + L
Sbjct: 342 CKLKSIPKNVFLSLQSLVSLDL 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,122
Number of Sequences: 5004
Number of extensions: 46273
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)