Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n14r
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0618 + 11267444-11267652,11268345-11268399,11269554-11270138     29   2.3  
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790...    29   2.3  
11_06_0729 - 26721730-26722797                                         28   5.4  

>09_02_0618 + 11267444-11267652,11268345-11268399,11269554-11270138
          Length = 282

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 490 GRDYRLRLHHYPTTHNNCCRHPFRYDRVSPYSXIFEMCDCTQLKCTP 630
           G+     LHHYP      CRHP +   ++P+S  F +    Q+  TP
Sbjct: 135 GKRQSTALHHYPP-----CRHPEKVIGIAPHSDGFGLTLLLQVDDTP 176


>07_03_0358 -
           17177253-17177369,17177635-17177931,17178961-17179032,
           17179117-17179383,17179752-17179910,17180194-17180295,
           17180696-17180767,17181105-17181200,17181710-17181871,
           17181941-17182021,17182837-17183094,17183173-17183275,
           17183412-17183542,17184827-17184919,17184999-17185099,
           17186271-17186355,17186487-17186701,17186779-17186842,
           17187128-17187214,17188922-17189022,17190206-17190397,
           17190533-17190599,17191211-17191351
          Length = 1020

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 227 QIRLYCSDSRSSLAAANKIL*IYPSSCWQL 138
           QI+L  +D +SSLA+  K+L ++P +C  L
Sbjct: 321 QIQLKFADYKSSLASFEKVLEVHPENCESL 350


>11_06_0729 - 26721730-26722797
          Length = 355

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 159 SIVMLATFKQCCYIXQASVDSETRLTCPLD-PVSDTFNYRQLL 34
           S+++ A F +  ++ + SV+  TRL CP    +++  N R +L
Sbjct: 51  SLILPAEFSKLYHLQELSVNPNTRLHCPSQLKIANLINLRYML 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,396
Number of Sequences: 37544
Number of extensions: 277643
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)