Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n14r
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05)                    32   0.34 
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   30   1.8  
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05)
          Length = 420

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 444 GGPSTTLTEEGCSQAWPGLSTTFTPLSDDSQ 536
           G  + T+T++G SQAW G   TF+P+S   Q
Sbjct: 320 GAINITITKQGSSQAWGGGVVTFSPVSAADQ 350


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 499 YRLRLHHYPTTHNNCCRHPFRYDRVSP 579
           +RL +HH+P++ ++ C  P  ++ + P
Sbjct: 391 FRLSIHHHPSSRHHHCHRPLLFNHLRP 417


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 484 RLGRDYRLRLHHYPTTHNNCCRHPFRYDRVSPYS 585
           ++ R  + R + + TT N+CC  PF+Y+    +S
Sbjct: 576 KVSRTDKARCYTWLTTSNDCCVFPFKYNNKQYHS 609


>SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 535 CESSDNGVNVVDNPGQAWEHPSSVNVVDGPPSG 437
           CE   NG+ V    GQA   P+  N  D   +G
Sbjct: 443 CELEGNGIGVSTTRGQAENDPNGTNTTDASTTG 475


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 254 PHRSDVRKQQIRLYCSDSRSSLAAANKIL*IYPSSCWQLLSNAVISVKLPL 102
           P+ +  +K    + CS S SS+  ++    +  + CW+ + NA+ SV L L
Sbjct: 494 PNLTLYKKHDFAVTCSPSTSSIGPSSLYKFVEGNRCWKTM-NAISSVTLAL 543


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 526 TTHNNCCRHPFRYDRVSPYS 585
           T H  CC  PF Y+  S YS
Sbjct: 545 TAHGKCCIFPFVYNATSQYS 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,160,123
Number of Sequences: 59808
Number of extensions: 349515
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)