Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n14f
         (571 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   5.6  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 15  EPAPAYTLVACNRTFQIFTNKDLHD 89
           +PAP Y+ V+   +F+   N+ LH+
Sbjct: 39  KPAPIYSPVSKPVSFESLPNRRLHE 63


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 355 IFRSMIVAETSMINMIYKSKC 293
           IF +++    SM+N +Y SKC
Sbjct: 152 IFVALLEHCFSMLNYVYSSKC 172


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 371 KKNIELLNKDPHRSDVRKQQIRLYCSDSRSSLAAANKIL*IYP 499
           KK I + +K   RSD +   I + C D    +  A  +L  +P
Sbjct: 214 KKLIVVKDKKKSRSDEQTIDICMRCHDQLCDMCGAINMLFGFP 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,331
Number of Sequences: 336
Number of extensions: 2592
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)