Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n14f
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    29   1.7  
At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SD...    29   2.9  
At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SD...    27   6.7  
At2g44480.1 68415.m05530 glycosyl hydrolase family 1 protein con...    27   6.7  

>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 9   LLEPAPAYTLVACNRTFQIFTNKDLHDHIEMGACSSCCESSDNGVNVVDNPGQA 170
           +L P   + L  C R   + T K LH HI       CC  ++  VNV    G A
Sbjct: 1   MLIPHYLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAA 54


>At1g54870.1 68414.m06265 short-chain dehydrogenase/reductase (SDR)
           family protein C-terminal similar to dormancy related
           protein GI:1220178 from [Trollius ledebourii]
          Length = 288

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 12  LEPAPAYTLVACNRTFQIFTNKDLH 86
           +E AP+Y  +ACN     FT + LH
Sbjct: 255 IEVAPSYVFLACNHCSSYFTGQVLH 279


>At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 289

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 3   ANLLEPAPAYTLVACNRTFQIFTNKDLH 86
           A  +E AP+Y  +ACN     +T + LH
Sbjct: 253 AQPVEVAPSYVFLACNHCSSYYTGQILH 280


>At2g44480.1 68415.m05530 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to amygdalin hydrolase isoform AH I precursor
           (GI:16757966) [Prunus serotina]
          Length = 517

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 497 DKFTKSCLQLPMKISNQNNKVVSAVYEHRFYADPYSVIRYSS*GLD-YNFSINDSR 333
           D FTK   Q P KIS+ +N  V+  + +RF  D   V      GLD + FSI+ SR
Sbjct: 70  DTFTK---QYPEKISDGSNGDVADEFYYRFKED---VAHMKEIGLDSFRFSISWSR 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,201,569
Number of Sequences: 28952
Number of extensions: 216120
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)