Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n13f
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    26   0.30 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   0.70 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.5  

>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 25 IQSTMKAFIFALALACVSAV 84
          + +T +AFI++LAL C+ A+
Sbjct: 2  VSNTKQAFIYSLALLCLHAI 21


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 31 STMKAFIFALALACVSAV 84
          +T +AFI++LAL C+ A+
Sbjct: 4  NTKQAFIYSLALLCLHAI 21


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 473 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 354
           E V +  T   A+P +A+++  +L+   S +   T AET+
Sbjct: 164 EPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETV 203


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 467 VASATTFSRASPPEAKDLRTRLKMRISP 384
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 483 EGDGSGSLSNDVLKGKSSGSERP 415
           EG G  SL   + +G+ +G+E P
Sbjct: 731 EGSGGDSLRTLLQRGQETGAEWP 753


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 513 SCNNYW 530
           SCNNYW
Sbjct: 100 SCNNYW 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,871
Number of Sequences: 438
Number of extensions: 2529
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)