Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n12r
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    24   1.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   6.2  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   6.2  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   6.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.2  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 181 FLGNLVPELLEVFETEI-NEIVTDIF 107
           FL +LVP++ E FE  +    VTD F
Sbjct: 177 FLAHLVPKIAEFFEYRVLPRKVTDFF 202


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 232 EITGIFNDPVLSEFVSRFLG 173
           EI  IF+ P+L +  S+F+G
Sbjct: 233 EIQTIFSVPLLMKIASQFVG 252


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 232 EITGIFNDPVLSEFVSRFLG 173
           EI  IF+ P+L +  S+F+G
Sbjct: 58  EIQTIFSVPLLMKIASQFVG 77


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +3

Query: 357 ASPLPYIVKPKAVTLRSYLPASNAMTGTSPSIE--RPKS 467
           ASPLP +V     T  +   ASN     SP  E  RP S
Sbjct: 193 ASPLPLLVPIPQRTASTASSASNYSPSQSPEPESVRPLS 231


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 687 ASKSRLSPSSGFSKNWI 737
           AS   +SPS GF   W+
Sbjct: 199 ASLPSISPSGGFLPKWL 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,141
Number of Sequences: 336
Number of extensions: 3021
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)