Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n12r
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    29   0.73 
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    29   0.73 
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   2.2  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   9.0  

>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +3

Query: 381 KPKAVTLRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKEL-ISNVLSFLTSKSSRVIR 557
           KP+    +S+ P  +     + S  +PKS  +TE  +N K++    ++ +      R +R
Sbjct: 167 KPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAANTKDIEEETMIEYSAQPVVRDLR 226

Query: 558 SPGSGIV*SSTERRSN*NGSKTG 626
              +  + ++ +R+    G K G
Sbjct: 227 QEAAQFLPAAFQRQKLAKGQKIG 249


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 739 IIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIP 569
           +I++  NP+  E + FEA  + +   F   +    ET  +L P  L  LS    T+P
Sbjct: 666 VIEYCVNPESPEHVIFEADAMELWSTFLMYIQKLPETFTLLIPHLLYHLSQATSTLP 722


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +3

Query: 390 AVTLRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGS 569
           +V   S  PAS   +GT   +E      +  +IS     +S + +  TS  + ++  P +
Sbjct: 746 SVGYTSTFPASGTTSGTVEVVEPTAGTVTETVISGSVSFMSTITAHDTSSGAVIVVEPTA 805

Query: 570 GIV 578
           G V
Sbjct: 806 GTV 808


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 31/105 (29%), Positives = 46/105 (43%)
 Frame = +3

Query: 417 ASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV*SSTER 596
           +S + +GT  S     S   T   S+    I++  S  +S SS    SP S    SS+  
Sbjct: 119 SSLSYSGTISSTSIAPSMIGTRTSSSY--FITSSSSTPSSSSSSSSSSPSSSSSKSSSSS 176

Query: 597 RSN*NGSKTGNVSDPVIMVCLKRSSIERISASKSRLSPSSGFSKN 731
           +S+ + S +   S         +SS    S+SKS  SPSS  S +
Sbjct: 177 KSSSSSSSSSKSSSS--SSSSSKSSSSSSSSSKSSASPSSSKSSS 219


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 657  GRP*SLDQKRYPFWTHFNWIASQLMIKRYRFLD 559
            G P  L+QKRY F     W+   ++ K  R +D
Sbjct: 2010 GCPQFLNQKRYDFVVREQWLRQTVLQKMARHMD 2042


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 277  LQEADVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLV 164
            +QEADV + ++G + +   +  D  + +F   FLG L+
Sbjct: 1043 IQEADVGVGIKGVEGQAASMSADYAIGQF--SFLGRLL 1078


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 488 YNFSTSRTLRPFDRRRSTSHC 426
           YNF  S +++PF    +++HC
Sbjct: 49  YNFKNSESIQPFLENVTSNHC 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,677
Number of Sequences: 5004
Number of extensions: 56381
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)