Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n12r
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)                   31   1.0  
SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)                 30   1.8  
SB_25955| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   2.3  
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -2

Query: 679  LSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEV 530
            LSM     QT    S +LP     Q D  S     +PLP  + TLED E+
Sbjct: 1320 LSMSHYQSQTASQPSVSLPTTQNMQNDSDSAPGSPVPLPSRKRTLEDTEI 1369


>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -2

Query: 745 NAIIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPL 566
           +  +Q+    ++ E    +A ++  L+++ Q+  T   +LP L+P Q  R+ + DQ I L
Sbjct: 162 SVFLQYARGCEQAEVQSDDADLVEALDQYEQSQ-TAPSSLPPLEPRQPSRVELLDQPIQL 220

Query: 565 P 563
           P
Sbjct: 221 P 221


>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 424 LDAGKYDLSVTALGFTIYGNGEAKIRVIRPRIKATLLIHLNIREGMALNLQEADVAISLE 245
           +DAG  D S+   GF +Y NG         RI ATL   +  R    ++ Q   V IS  
Sbjct: 150 IDAGSDDKSLVHKGFRVYPNGNV---TFSTRISATLSCKMEFR-NFPMDRQSCPVTISSY 205

Query: 244 GF-QTEITGIFND 209
            F + EI  I+ D
Sbjct: 206 FFPEDEIYYIWGD 218


>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 612

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -2

Query: 481 SVLRGLFGLSIDGEVPVIALDAGKYDLSVTALGFTIYGNGEAKIRVIRPRIKAT 320
           +++  LFGL +D  VP IAL+  K    +      +  + +  I++ +PR K+T
Sbjct: 137 NLILNLFGLMVDASVPDIALEPDKTVKKINVY-LALKNSSQTIIQMFKPRRKST 189


>SB_46678| Best HMM Match : GatB_Yqey (HMM E-Value=1.9)
          Length = 235

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
 Frame = -2

Query: 415 GKYDLSVTALGFTIY----GNGEAKIRVIRPRIKATLLIHLNIREGMALNLQEADVAISL 248
           G+ D+  +A+  T++       +AK+  +  +    L+ H  +RE     ++   +  S 
Sbjct: 96  GQDDVRKSAVELTLFVLQNRETQAKVSKVAAQTLKDLINHPEMREIFLEYIKRLLLDEST 155

Query: 247 EGFQTEIT-GIFNDPVLSEFVSRFLGNLVP------ELLEVFETEINEIVTDI 110
           +    ++  G+ NDPV+ +F+    G+LV       + +E+ +T  +E+V+DI
Sbjct: 156 KDVCKDLLQGVINDPVVKKFMEESFGDLVASSVVRNKAVELGKTVTHEVVSDI 208


>SB_25955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 488 YNFSTSRTLRPFDRRRSTSHCVG 420
           +N STS T+ PF+R  S+SH +G
Sbjct: 127 FNISTSPTIYPFNRLDSSSHTIG 149


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 414  PASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSP 563
            PA  AM  T   +++ K P S +   N  + + +VL+   ++S RV++SP
Sbjct: 1898 PAKPAMPTTHKQLQQEKQP-SEKAPENTAQDVPDVLAEQRTRSGRVVKSP 1946


>SB_39694| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 893

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 340 RPRIKATLLIHLNIREGMALNLQEADVAISLEGFQTEITGIFNDPVLSE 194
           RP  KA L     I +   +  Q+       +G+QTEI  IFN+  L E
Sbjct: 332 RPTFKAVLEALEEISDSALMETQQESFQSMQDGWQTEIEQIFNELKLKE 380


>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = +3

Query: 444 PSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV*SSTERRSN*NGSKT 623
           P+I  P  P STE ISN  + +SN +  +++ +  +  SP      + TE  SN +    
Sbjct: 719 PNIIEPL-PNSTEPISNSPDPVSNNIEPVSNSTEPLSNSPEPPP--NITEPLSN-STEPL 774

Query: 624 GNVSDPV-IMVCLKRSSIERISASKSRLSPSSGFSKN 731
            N++DP+ I+     +S E +S S   +S S+  + N
Sbjct: 775 SNITDPLPIITEAVSNSPEPVSNSTEAVSTSNEPASN 811


>SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 619 LDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTF 512
           +DP   +R+S D  + P+PG  +T   + +RKL +F
Sbjct: 387 IDPGHAERISED--SYPVPGSSLTAHSIPLRKLQSF 420


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = -2

Query: 556 RMTLEDLEVRKLSTFEINSLTFDIISVLRGLFGL 455
           R+  E+LEV    T+++++ T  ++S+LRG+F L
Sbjct: 224 RLISEELEVE--CTWDVSTATAALLSILRGVFAL 255


>SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 305 QVDQQSRLDTRTDHADFRFTIAVYCEAQSSHAEIVFTSVQRND 433
           ++     LD  T  A++R  I  YC     H E++ T    ND
Sbjct: 268 EITLNGSLDRETI-AEYRLRILAYCTIYQDHTEVLITVTDVND 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,619,885
Number of Sequences: 59808
Number of extensions: 397583
Number of successful extensions: 1069
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)