Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n12r
         (764 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   5.9  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.8  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.8  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   7.8  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 273 WRFRA-IPSRIFKWINRVALIRGRITRIFASPLPY 374
           W++ A +  R+F WI  +A++ G    I  +P  Y
Sbjct: 649 WKYVAMVLDRLFLWIFTIAVVFGTAGIILQAPTLY 683


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 273 WRFRA-IPSRIFKWINRVALIRGRITRIFASPLPY 374
           W++ A +  R+F WI  +A++ G    I  +P  Y
Sbjct: 497 WKYVAMVLDRLFLWIFTLAVLAGTAGIILQAPTLY 531


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 273 WRFRA-IPSRIFKWINRVALIRGRITRIFASPLPY 374
           W++ A +  R+F WI  +A++ G    I  +P  Y
Sbjct: 497 WKYVAMVLDRLFLWIFTLAVLAGTAGIILQAPTLY 531


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 273 WRFRAIP-SRIFKWINRVALIRGRITRIFASPLPY 374
           W++ A+   R+F WI  +A + G    I  +P  Y
Sbjct: 495 WKYVALVLDRLFLWIFTIACVLGTCLIILQAPSLY 529


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,138
Number of Sequences: 2352
Number of extensions: 14504
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)