Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n12r
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    34   0.12 
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti...    30   1.9  
At5g56990.1 68418.m07113 expressed protein  ; expression support...    29   2.6  
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro...    28   5.9  

>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
 Frame = -2

Query: 760 DVXGANAIIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQLDRLSVDD 581
           DV G+ ++++    PD  +S++ E LI+      RQT  + +  LP+    +L+ +  D 
Sbjct: 598 DVTGSTSLVEL---PDLSDSMNLEELIMEGCRSLRQTPWSLNR-LPLR---KLNMVKCDS 650

Query: 580 QTIPLPGLRMTLEDLEVRKLST----FEINSLTFDIISVLRGLFGLSIDGEVPV 431
               L GL +  +D    K S       IN L  D ++ L  L  LSI GE+ V
Sbjct: 651 ----LMGLLLVTDDHNQPKASRPSPYRHINLLLLDTVTALSSLTELSIQGEISV 700


>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
           ligase SCF complex F-box subunit; identical to F-box
           containing protein ORE9 GI:15420162 from [Arabidopsis
           thaliana]
          Length = 693

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = -2

Query: 679 LSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKL 521
           LS+ ERF  T I GS +L  LD +      V+ +++ LPG  +  E L +RKL
Sbjct: 582 LSLWERFFLTGI-GSLSLSELDYWPPQDRDVNQRSLSLPGAGLLQECLTLRKL 633


>At5g56990.1 68418.m07113 expressed protein  ; expression supported
           by MPSS
          Length = 224

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 634 ETLPVLDPFQLDRLSVDDQTIPLPGLR 554
           ET P++DPF+LD  S +D+ I    LR
Sbjct: 72  ETRPIMDPFRLDVCSTNDEMIHGVALR 98


>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
           protein similar to meiotic asynaptic mutant 1
           [Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
           oleracea var. alboglabra] GI:23506946; contains Pfam
           profile PF02301: HORMA domain
          Length = 1399

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
 Frame = +3

Query: 231 SV*KPSRLIATSASWRFRAIPSRIFKWINRVALIRGRITRIFASPLPYIVKPK-AVTL-- 401
           S+ +       SAS R   +   IF W     L   +I  +F  P     + K  VT+  
Sbjct: 436 SIYRKKHFTLNSASLRISGLAGSIFAWAVGFCLFSAQIGHVFVQPKTRSSESKPKVTMEE 495

Query: 402 --RSYLPASNAMTGTSPSIERPKSPRSTE 482
                 P S+      PS E   +P S+E
Sbjct: 496 LEEKLTPPSSEPKSAPPSSEPKSAPPSSE 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,635,218
Number of Sequences: 28952
Number of extensions: 289241
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)