Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n12f
         (565 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   5.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.6  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 501 ASPLPYIVKPKAVTLRSYLPASNAMTGTSPSIE--RPKS 391
           ASPLP +V     T  +   ASN     SP  E  RP S
Sbjct: 193 ASPLPLLVPIPQRTASTASSASNYSPSQSPEPESVRPLS 231


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 171 ASKSRLSPSSGFSKNWI 121
           AS   +SPS GF   W+
Sbjct: 199 ASLPSISPSGGFLPKWL 215


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 560 GYSSGSTESP*YEDGSRGFSLHHCRIL*SPK 468
           GY  G+      EDGSRG      R L  P+
Sbjct: 609 GYGLGAELYQIQEDGSRGVIAFASRSLRGPE 639


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 184 RKN*RFKVKALALIWIFQELDNCI 113
           R+N      A+ + W++ + D CI
Sbjct: 536 RENYTLPASAVGIAWLYVDNDCCI 559


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,858
Number of Sequences: 336
Number of extensions: 2524
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)