Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n12f
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 30 0.20
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 29 0.47
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 29 0.47
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 28 0.82
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 1.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 3.3
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 25 5.8
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.7
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 7.7
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 7.7
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 30.3 bits (65), Expect = 0.20
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 6/147 (4%)
Frame = -2
Query: 438 SNAMTGTS-PSIERPKSPRS-TEIISNVKELISNVL----SFLTSKSSRVIRSPGSGIV* 277
S ++G+S P +P +P S + S+ K++ S L +T+ + V + S +
Sbjct: 385 STPISGSSFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLI 444
Query: 276 SSTERRSN*NGSKTGNVSDPVIMVCLKRSSIERISASKSRLSPSSGFSKNWIIALAPTTS 97
ST S S+ VS V + SSI SAS ++PSS S + + ++
Sbjct: 445 ISTFTSSY-EHSEPFKVSS-VPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQ 502
Query: 96 FLGYAAASPRAATNIQTKRIFVIPITV 16
+ + P + + T F PIT+
Sbjct: 503 SSQFTVSVPSSTQSYSTSSNFTTPITI 529
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 29.1 bits (62), Expect = 0.47
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -2
Query: 477 KPKAVTLRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKEL-ISNVLSFLTSKSSRVIR 301
KP+ +S+ P + + S +PKS +TE +N K++ ++ + R +R
Sbjct: 167 KPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAANTKDIEEETMIEYSAQPVVRDLR 226
Query: 300 SPGSGIV*SSTERRSN*NGSKTG 232
+ + ++ +R+ G K G
Sbjct: 227 QEAAQFLPAAFQRQKLAKGQKIG 249
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 29.1 bits (62), Expect = 0.47
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 119 IIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIP 289
+I++ NP+ E + FEA + + F + ET +L P L LS T+P
Sbjct: 666 VIEYCVNPESPEHVIFEADAMELWSTFLMYIQKLPETFTLLIPHLLYHLSQATSTLP 722
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 28.3 bits (60), Expect = 0.82
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 156 LSPSSGFSKNWIIALAPTTSFLGYAAASPRAA 61
LSPSS S N + P TSF+G + P A+
Sbjct: 80 LSPSSAQSHNTALITEPLTSFIGGTSQYPSAS 111
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 468 AVTLRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGS 289
+V S PAS +GT +E + +IS +S + + TS + ++ P +
Sbjct: 746 SVGYTSTFPASGTTSGTVEVVEPTAGTVTETVISGSVSFMSTITAHDTSSGAVIVVEPTA 805
Query: 288 GIV 280
G V
Sbjct: 806 GTV 808
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.4
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = -2
Query: 441 ASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV*SSTER 262
+S + +GT S S T S+ I++ S +S SS SP S SS+
Sbjct: 119 SSLSYSGTISSTSIAPSMIGTRTSSSY--FITSSSSTPSSSSSSSSSSPSSSSSKSSSSS 176
Query: 261 RSN*NGSKTGNVSDPVIMVCLKRSSIERISASKSRLSPSSGFSKNWIIALAPTTSFLGYA 82
+S+ + S + S +SS S+SKS SPSS S + + + TS +
Sbjct: 177 KSSSSSSSSSKSSSS--SSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPAS 234
Query: 81 AASPRA-ATNIQT 46
++S A +N +T
Sbjct: 235 SSSSGAIVSNAKT 247
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 201 GRP*SLDQKRYPFWTHFNWIASQLMIKRYRFLD 299
G P L+QKRY F W+ ++ K R +D
Sbjct: 2010 GCPQFLNQKRYDFVVREQWLRQTVLQKMARHMD 2042
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 370 YNFSTSRTLRPFDRRRSTSHC 432
YNF S +++PF +++HC
Sbjct: 49 YNFKNSESIQPFLENVTSNHC 69
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 79 SEPQSSYEYTNKTHICNPDN 20
+EP SS + N ICN DN
Sbjct: 96 NEPDSSNSHHNNESICNNDN 115
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 246 GSKTGNVSDPVIMVCLKRSSIERISASKSRLSPSSGFS 133
G+ +++ V CL ER+ ASK P++ F+
Sbjct: 278 GTPVSLITEAVFARCLSSLKSERVRASKKLTGPNTKFT 315
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 7.7
Identities = 20/109 (18%), Positives = 44/109 (40%)
Frame = -2
Query: 465 VTLRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSG 286
V+L+S P S + + P+ P S +V + + + ++ P
Sbjct: 84 VSLQSQQPLSKPVVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGS 143
Query: 285 IV*SSTERRSN*NGSKTGNVSDPVIMVCLKRSSIERISASKSRLSPSSG 139
+ S++ R+N + T + + V + ++AS + +PS+G
Sbjct: 144 VPPSASVSRANSTATTTPHKAGVVSNPAAANVHVLSVAASPNPSTPSNG 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,543
Number of Sequences: 5004
Number of extensions: 47125
Number of successful extensions: 181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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